- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 50 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 5 residues within 4Å:- Chain A: N.12, R.15, E.16, G.17, V.224
Ligand excluded by PLIPDMS.3: 5 residues within 4Å:- Chain A: I.41, H.92, P.93, T.94, I.95
Ligand excluded by PLIPDMS.4: 6 residues within 4Å:- Chain A: A.59, D.60, L.100, I.153, Y.175, L.177
Ligand excluded by PLIPDMS.5: 3 residues within 4Å:- Chain A: F.82, F.114, R.117
Ligand excluded by PLIPDMS.6: 2 residues within 4Å:- Chain A: R.164
- Ligands: DMS.7
Ligand excluded by PLIPDMS.7: 3 residues within 4Å:- Chain A: Q.165, S.168
- Ligands: DMS.6
Ligand excluded by PLIPDMS.9: 5 residues within 4Å:- Chain A: I.30, L.34, Q.80, E.83, M.84
Ligand excluded by PLIPDMS.11: 8 residues within 4Å:- Chain A: M.1, R.3, E.119, V.123, D.124, H.146, N.147, I.148
Ligand excluded by PLIPDMS.12: 4 residues within 4Å:- Chain A: L.34, K.35, D.38, K.91
Ligand excluded by PLIPDMS.14: 5 residues within 4Å:- Chain A: S.221, A.265, S.266, R.267
- Ligands: CL.18
Ligand excluded by PLIPDMS.20: 6 residues within 4Å:- Chain A: L.58, A.59
- Chain B: P.18, I.20, L.21, S.178
Ligand excluded by PLIPDMS.22: 8 residues within 4Å:- Chain B: K.50, G.54, R.55, P.56
- Chain D: P.56, T.57, Q.215
- Ligands: DMS.71
Ligand excluded by PLIPDMS.23: 1 residues within 4Å:- Ligands: CL.47
Ligand excluded by PLIPDMS.24: 5 residues within 4Å:- Chain B: Q.42, F.45, A.46, L.49, M.207
Ligand excluded by PLIPDMS.25: 6 residues within 4Å:- Chain B: Q.36, K.37, D.38, P.39, Q.42
- Ligands: DMS.26
Ligand excluded by PLIPDMS.26: 3 residues within 4Å:- Chain B: Q.36, Q.42
- Ligands: DMS.25
Ligand excluded by PLIPDMS.27: 4 residues within 4Å:- Chain B: P.56, E.211, A.214, Q.215
Ligand excluded by PLIPDMS.28: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPDMS.29: 4 residues within 4Å:- Chain B: T.3, L.4, L.5, N.6
Ligand excluded by PLIPDMS.30: 1 residues within 4Å:- Chain B: E.11
Ligand excluded by PLIPDMS.36: 5 residues within 4Å:- Chain B: T.248, S.249, V.250, G.251, R.321
Ligand excluded by PLIPDMS.38: 4 residues within 4Å:- Chain B: I.262, G.265, H.267, H.273
Ligand excluded by PLIPDMS.39: 4 residues within 4Å:- Chain B: H.357, K.360, M.361, E.364
Ligand excluded by PLIPDMS.40: 5 residues within 4Å:- Chain B: I.65, T.66, A.67, T.69, M.362
Ligand excluded by PLIPDMS.44: 7 residues within 4Å:- Chain B: E.109, L.166, C.170, G.189, T.190, F.306
- Ligands: CL.48
Ligand excluded by PLIPDMS.51: 5 residues within 4Å:- Chain C: N.12, R.15, E.16, G.17, V.224
Ligand excluded by PLIPDMS.52: 5 residues within 4Å:- Chain C: I.41, H.92, P.93, T.94, I.95
Ligand excluded by PLIPDMS.53: 6 residues within 4Å:- Chain C: A.59, D.60, L.100, I.153, Y.175, L.177
Ligand excluded by PLIPDMS.54: 3 residues within 4Å:- Chain C: F.82, F.114, R.117
Ligand excluded by PLIPDMS.55: 2 residues within 4Å:- Chain C: R.164
- Ligands: DMS.56
Ligand excluded by PLIPDMS.56: 3 residues within 4Å:- Chain C: Q.165, S.168
- Ligands: DMS.55
Ligand excluded by PLIPDMS.58: 5 residues within 4Å:- Chain C: I.30, L.34, Q.80, E.83, M.84
Ligand excluded by PLIPDMS.60: 8 residues within 4Å:- Chain C: M.1, R.3, E.119, V.123, D.124, H.146, N.147, I.148
Ligand excluded by PLIPDMS.61: 4 residues within 4Å:- Chain C: L.34, K.35, D.38, K.91
Ligand excluded by PLIPDMS.63: 5 residues within 4Å:- Chain C: S.221, A.265, S.266, R.267
- Ligands: CL.67
Ligand excluded by PLIPDMS.69: 6 residues within 4Å:- Chain C: L.58, A.59
- Chain D: P.18, I.20, L.21, S.178
Ligand excluded by PLIPDMS.71: 8 residues within 4Å:- Chain B: P.56, T.57, Q.215
- Chain D: K.50, G.54, R.55, P.56
- Ligands: DMS.22
Ligand excluded by PLIPDMS.72: 1 residues within 4Å:- Ligands: CL.96
Ligand excluded by PLIPDMS.73: 5 residues within 4Å:- Chain D: Q.42, F.45, A.46, L.49, M.207
Ligand excluded by PLIPDMS.74: 6 residues within 4Å:- Chain D: Q.36, K.37, D.38, P.39, Q.42
- Ligands: DMS.75
Ligand excluded by PLIPDMS.75: 3 residues within 4Å:- Chain D: Q.36, Q.42
- Ligands: DMS.74
Ligand excluded by PLIPDMS.76: 4 residues within 4Å:- Chain D: P.56, E.211, A.214, Q.215
Ligand excluded by PLIPDMS.77: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPDMS.78: 4 residues within 4Å:- Chain D: T.3, L.4, L.5, N.6
Ligand excluded by PLIPDMS.79: 1 residues within 4Å:- Chain D: E.11
Ligand excluded by PLIPDMS.85: 5 residues within 4Å:- Chain D: T.248, S.249, V.250, G.251, R.321
Ligand excluded by PLIPDMS.87: 4 residues within 4Å:- Chain D: I.262, G.265, H.267, H.273
Ligand excluded by PLIPDMS.88: 4 residues within 4Å:- Chain D: H.357, K.360, M.361, E.364
Ligand excluded by PLIPDMS.89: 5 residues within 4Å:- Chain D: I.65, T.66, A.67, T.69, M.362
Ligand excluded by PLIPDMS.93: 7 residues within 4Å:- Chain D: E.109, L.166, C.170, G.189, T.190, F.306
- Ligands: CL.97
Ligand excluded by PLIP- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 12 residues within 4Å:- Chain A: F.22, T.24, G.51, V.52, P.53, F.54, P.57, D.60, I.64, N.68, L.100, Y.102
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.24, A:F.54, A:N.68
- Water bridges: A:V.52, A:D.60, A:D.60
GOL.57: 12 residues within 4Å:- Chain C: F.22, T.24, G.51, V.52, P.53, F.54, P.57, D.60, I.64, N.68, L.100, Y.102
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.24, C:F.54, C:N.68
- Water bridges: C:V.52, C:D.60, C:D.60
- 14 x CL: CHLORIDE ION(Non-functional Binders)
CL.17: 1 residues within 4Å:- Chain A: V.224
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain A: A.264, R.267
- Ligands: DMS.14
Ligand excluded by PLIPCL.32: 1 residues within 4Å:- Chain B: D.218
Ligand excluded by PLIPCL.33: 1 residues within 4Å:- Chain B: S.143
Ligand excluded by PLIPCL.46: 1 residues within 4Å:- Chain B: R.150
Ligand excluded by PLIPCL.47: 2 residues within 4Å:- Chain B: G.274
- Ligands: DMS.23
Ligand excluded by PLIPCL.48: 7 residues within 4Å:- Chain B: T.110, G.111, A.112, G.113, Q.114, H.115
- Ligands: DMS.44
Ligand excluded by PLIPCL.66: 1 residues within 4Å:- Chain C: V.224
Ligand excluded by PLIPCL.67: 3 residues within 4Å:- Chain C: A.264, R.267
- Ligands: DMS.63
Ligand excluded by PLIPCL.81: 1 residues within 4Å:- Chain D: D.218
Ligand excluded by PLIPCL.82: 1 residues within 4Å:- Chain D: S.143
Ligand excluded by PLIPCL.95: 1 residues within 4Å:- Chain D: R.150
Ligand excluded by PLIPCL.96: 2 residues within 4Å:- Chain D: G.274
- Ligands: DMS.72
Ligand excluded by PLIPCL.97: 7 residues within 4Å:- Chain D: T.110, G.111, A.112, G.113, Q.114, H.115
- Ligands: DMS.93
Ligand excluded by PLIP- 6 x CS: CESIUM ION(Non-covalent)
CS.19: 4 residues within 4Å:- Chain A: A.167, G.170, H.204, A.206
No protein-ligand interaction detected (PLIP)CS.31: 3 residues within 4Å:- Chain B: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.49: 7 residues within 4Å:- Chain B: V.231, G.232, G.268, P.270, S.297, L.304, F.306
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:G.232, B:G.268
CS.68: 4 residues within 4Å:- Chain C: A.167, G.170, H.204, A.206
No protein-ligand interaction detected (PLIP)CS.80: 3 residues within 4Å:- Chain D: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.98: 7 residues within 4Å:- Chain D: V.231, G.232, G.268, P.270, S.297, L.304, F.306
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:G.232, D:G.268
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.21: 17 residues within 4Å:- Chain B: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, A.348, E.350, S.377, G.378
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:A.85, B:K.87, B:A.348
- Hydrogen bonds: B:T.190, B:G.232, B:G.233, B:G.234, B:S.235, B:N.236, B:N.236, B:S.377
- Water bridges: B:Q.114, B:T.190, B:T.190, B:S.235, B:S.235, B:A.237
- Salt bridges: B:H.86, B:K.87
- pi-Stacking: B:H.86
PLP.70: 17 residues within 4Å:- Chain D: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, A.348, E.350, S.377, G.378
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:A.85, D:K.87, D:A.348
- Hydrogen bonds: D:T.190, D:T.190, D:G.232, D:G.233, D:G.234, D:S.235, D:N.236, D:N.236, D:S.377
- Water bridges: D:Q.114, D:S.235, D:S.235, D:A.237
- Salt bridges: D:H.86, D:K.87
- pi-Stacking: D:H.86
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.34: 6 residues within 4Å:- Chain B: T.165, E.266, E.296, S.297, Y.298, D.305
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:T.165, B:E.266, B:E.296, B:D.305
- Water bridges: B:T.165, B:L.166, B:L.166, B:E.266, B:S.297
PEG.43: 6 residues within 4Å:- Chain B: G.10, E.11, F.12, Y.315, S.318, I.319
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.11, B:S.318
- Water bridges: B:E.11
PEG.83: 6 residues within 4Å:- Chain D: T.165, E.266, E.296, S.297, Y.298, D.305
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:E.266
- Water bridges: D:T.165, D:T.165, D:L.166, D:S.297
PEG.92: 6 residues within 4Å:- Chain D: G.10, E.11, F.12, Y.315, S.318, I.319
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.11, D:S.318
- Water bridges: D:E.11
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase with cesium ion at the metal coordination site at 1.60 Angstrom resolution. To be Published
- Release Date
- 2021-12-29
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 7l4d.1
The internal aldimine form of the wild-type Salmonella typhimurium Tryptophan Synthase with cesium ion at the metal coordination site at 1.60 Angstrom resolution
Tryptophan synthase alpha chain
Toggle Identical (AC)Tryptophan synthase beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8x.1 | 1k8y.1 | 1k8z.1 | 1kfc.1 | 1kfj.1 | 1kfk.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 more...less...2clo.1 | 2j9x.1 | 2j9y.1 | 2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6wx3.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7ki7.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l1h.1 | 7l47.1 | 7l5h.1 | 7lev.1 | 7lgx.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lut.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7m3s.2 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b03.1 | 8b05.1 | 8b06.1 | 8b08.1 | 8eyp.1 | 8eys.1 | 8ezc.1