- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x F6F: 2-{[4-(TRIFLUOROMETHOXY)BENZOYL]AMINO}ETHYL DIHYDROGEN PHOSPHATE(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: N.108, N.109
- Chain B: R.275, A.290
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.108, B:R.275
EDO.5: 4 residues within 4Å:- Chain B: T.3, L.4, L.5, N.6
No protein-ligand interaction detected (PLIP)EDO.8: 4 residues within 4Å:- Chain B: T.248, S.249, V.250, G.251
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.321
- Water bridges: B:D.225, B:G.251, B:R.321, B:D.323
EDO.9: 4 residues within 4Å:- Chain B: E.334, K.337, T.338, R.341
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.334, B:E.334, B:R.341
EDO.11: 3 residues within 4Å:- Chain B: K.272, H.273, G.274
1 PLIP interactions:1 interactions with chain B- Water bridges: B:G.274
EDO.12: 3 residues within 4Å:- Chain B: Q.42, F.45, A.46
No protein-ligand interaction detected (PLIP)EDO.13: 2 residues within 4Å:- Chain B: E.182, T.183
No protein-ligand interaction detected (PLIP)EDO.18: 4 residues within 4Å:- Chain C: N.108, N.109
- Chain D: R.275, A.290
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.108
EDO.21: 4 residues within 4Å:- Chain D: T.3, L.4, L.5, N.6
No protein-ligand interaction detected (PLIP)EDO.24: 4 residues within 4Å:- Chain D: T.248, S.249, V.250, G.251
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.321
- Water bridges: D:D.225, D:G.251, D:R.321, D:D.323
EDO.25: 4 residues within 4Å:- Chain D: E.334, K.337, T.338, R.341
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.334, D:T.338, D:R.341
EDO.27: 3 residues within 4Å:- Chain D: K.272, H.273, G.274
1 PLIP interactions:1 interactions with chain D- Water bridges: D:G.274
EDO.28: 3 residues within 4Å:- Chain D: Q.42, F.45, A.46
No protein-ligand interaction detected (PLIP)EDO.29: 2 residues within 4Å:- Chain D: E.182, T.183
No protein-ligand interaction detected (PLIP)- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.4: 19 residues within 4Å:- Chain B: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
- Ligands: F6F.7
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:A.85, B:K.87, B:A.348
- Hydrogen bonds: B:K.87, B:Q.114, B:T.190, B:G.232, B:G.233, B:G.234, B:S.235, B:N.236, B:N.236, B:S.377
- Water bridges: B:T.190, B:T.190, B:A.237
- Salt bridges: B:H.86
- pi-Stacking: B:H.86
PLP.20: 19 residues within 4Å:- Chain D: A.85, H.86, K.87, Q.114, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
- Ligands: F6F.23
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:A.85, D:K.87, D:A.348
- Hydrogen bonds: D:Q.114, D:T.190, D:T.190, D:G.232, D:G.233, D:G.234, D:S.235, D:N.236, D:N.236, D:S.377
- Water bridges: D:A.237
- Salt bridges: D:H.86
- pi-Stacking: D:H.86
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.10: 5 residues within 4Å:- Chain B: F.385, H.388
- Chain D: S.143, P.144, F.147
1 PLIP interactions:1 interactions with chain B- pi-Cation interactions: B:H.388
DMS.26: 5 residues within 4Å:- Chain B: S.143, P.144, F.147
- Chain D: F.385, H.388
1 PLIP interactions:1 interactions with chain D- pi-Cation interactions: D:H.388
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.14: 4 residues within 4Å:- Chain B: G.232, P.270, F.306, S.308
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.232, B:S.308
NA.15: 3 residues within 4Å:- Chain B: E.296, S.297, D.305
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.297, B:S.297
- Water bridges: B:T.165
NA.30: 4 residues within 4Å:- Chain D: G.232, P.270, F.306, S.308
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:F.306, D:S.308
NA.31: 3 residues within 4Å:- Chain D: E.296, S.297, D.305
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.296, D:S.297, D:S.297
- Water bridges: D:D.305
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., The internal aldimine form of the wild-type Salmonella Typhimurium Tryptophan Synthase in complex with N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor at the alpha-and beta-site, sodium ion at the metal coordination site, and another F6F molecule at the enzyme beta-site at 1.55 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring. To be Published
- Release Date
- 2021-09-22
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 7m3s.2 (1 other biounit)
The internal aldimine form of the wild-type Salmonella Typhimurium Tryptophan Synthase in complex with N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor at the alpha-and beta-site, sodium ion at the metal coordination site, and another F6F molecule at the enzyme beta-site at 1.55 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring
Tryptophan synthase alpha chain
Toggle Identical (AC)Tryptophan synthase beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8x.1 | 1k8y.1 | 1k8z.1 | 1kfc.1 | 1kfj.1 | 1kfk.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 more...less...2clo.1 | 2j9x.1 | 2j9y.1 | 2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6wx3.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7ki7.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l1h.1 | 7l47.1 | 7l4d.1 | 7l5h.1 | 7lev.1 | 7lgx.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lut.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b03.1 | 8b05.1 | 8b06.1 | 8b08.1 | 8eyp.1 | 8eys.1 | 8ezc.1 | 8rsx.1 | 8rsy.1 | 8rsz.1