- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x F9F: 2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL DIHYDROGEN PHOSPHATE(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: A.113, F.114, R.117
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.113
- Water bridges: A:L.105, A:R.117
EDO.7: 4 residues within 4Å:- Chain B: D.218, K.219, E.220, G.221
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.218
EDO.10: 6 residues within 4Å:- Chain B: H.273, G.274, R.275, M.286, M.287, Q.288
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.288
- Water bridges: B:H.273
EDO.11: 4 residues within 4Å:- Chain B: I.262, E.263, G.265, H.267
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.263
- Water bridges: B:H.273
EDO.13: 3 residues within 4Å:- Chain B: H.260, G.261, E.263
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.263
EDO.20: 3 residues within 4Å:- Chain C: A.113, F.114, R.117
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.113
- Water bridges: C:L.105, C:R.117
EDO.25: 4 residues within 4Å:- Chain D: D.218, K.219, E.220, G.221
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.218
EDO.28: 6 residues within 4Å:- Chain D: H.273, G.274, R.275, M.286, M.287, Q.288
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.288
- Water bridges: D:H.273
EDO.29: 4 residues within 4Å:- Chain D: I.262, E.263, G.265, H.267
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.263
- Water bridges: D:H.273
EDO.31: 3 residues within 4Å:- Chain D: H.260, G.261, E.263
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.263
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 3 residues within 4Å:- Chain A: A.167, G.170, H.204
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain B: Q.42, F.45
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain B: S.143
- Chain D: I.384, F.385
Ligand excluded by PLIPCL.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.21: 3 residues within 4Å:- Chain C: A.167, G.170, H.204
Ligand excluded by PLIPCL.34: 2 residues within 4Å:- Chain D: Q.42, F.45
Ligand excluded by PLIPCL.35: 3 residues within 4Å:- Chain B: I.384, F.385
- Chain D: S.143
Ligand excluded by PLIPCL.36: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 4 x BZI: BENZIMIDAZOLE(Non-covalent)
BZI.4: 10 residues within 4Å:- Chain B: K.87, E.109, H.115, L.166, G.189, T.190, G.232, G.233, F.306
- Ligands: 0JO.6
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.166, B:T.190, B:F.306
- Hydrogen bonds: B:K.87, B:K.87, B:E.109
- pi-Stacking: B:F.306
BZI.5: 5 residues within 4Å:- Chain B: T.3, L.4, L.5, N.6, P.7
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:N.6
- Water bridges: B:T.3, B:N.6
BZI.22: 10 residues within 4Å:- Chain D: K.87, E.109, H.115, L.166, G.189, T.190, G.232, G.233, F.306
- Ligands: 0JO.24
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:L.166, D:T.190, D:F.306
- Hydrogen bonds: D:K.87, D:K.87
- pi-Stacking: D:F.306
BZI.23: 5 residues within 4Å:- Chain D: T.3, L.4, L.5, N.6, P.7
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:N.6
- Water bridges: D:T.3, D:N.6
- 2 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
0JO.6: 24 residues within 4Å:- Chain B: A.85, H.86, K.87, T.110, G.111, A.112, G.113, Q.114, H.115, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
- Ligands: BZI.4
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:A.85, B:A.348, B:E.350
- Hydrogen bonds: B:K.87, B:G.111, B:A.112, B:G.113, B:Q.114, B:H.115, B:T.190, B:T.190, B:G.232, B:G.233, B:G.234, B:S.235, B:S.235, B:N.236, B:N.236, B:S.377
- Water bridges: B:A.237
- Salt bridges: B:H.86, B:K.87, B:K.87
- pi-Stacking: B:H.86
0JO.24: 24 residues within 4Å:- Chain D: A.85, H.86, K.87, T.110, G.111, A.112, G.113, Q.114, H.115, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
- Ligands: BZI.22
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:A.85, D:A.348, D:E.350
- Hydrogen bonds: D:K.87, D:T.110, D:G.111, D:A.112, D:G.113, D:Q.114, D:H.115, D:T.190, D:T.190, D:G.232, D:G.233, D:G.234, D:S.235, D:S.235, D:N.236, D:N.236, D:S.377
- Water bridges: D:A.237
- Salt bridges: D:H.86, D:K.87, D:K.87
- pi-Stacking: D:H.86
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.8: 9 residues within 4Å:- Chain B: K.50, G.54, R.55, P.56
- Chain D: P.56, T.57, A.58, Q.215
- Ligands: DMS.26
No protein-ligand interaction detected (PLIP)DMS.9: 2 residues within 4Å:- Chain B: R.363, E.364
No protein-ligand interaction detected (PLIP)DMS.26: 9 residues within 4Å:- Chain B: P.56, T.57, A.58, Q.215
- Chain D: K.50, G.54, R.55, P.56
- Ligands: DMS.8
No protein-ligand interaction detected (PLIP)DMS.27: 2 residues within 4Å:- Chain D: R.363, E.364
No protein-ligand interaction detected (PLIP)- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.12: 6 residues within 4Å:- Chain B: N.6, Y.8, F.9, Q.312, Y.315, L.316
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.8, B:Q.312
- Water bridges: B:G.10
PEG.30: 6 residues within 4Å:- Chain D: N.6, Y.8, F.9, Q.312, Y.315, L.316
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.8, D:Q.312
- Water bridges: D:G.10
- 4 x CS: CESIUM ION(Non-covalent)
CS.14: 3 residues within 4Å:- Chain B: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.15: 6 residues within 4Å:- Chain B: V.231, G.232, G.268, L.304, F.306, S.308
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:G.232, B:F.306
CS.32: 3 residues within 4Å:- Chain D: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.33: 6 residues within 4Å:- Chain D: V.231, G.232, G.268, L.304, F.306, S.308
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:G.232, D:F.306
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., The aminoacrylate form of mutant beta-K167T Salmonella typhimurium Tryptophan Synthase in complex with with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, benzimidazole (BZI) at the enzyme beta site and cesium ion at the metal coordination site at 1.80 Angstrom resolution. To be Published
- Release Date
- 2022-01-26
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 7lgx.1
The aminoacrylate form of mutant beta-K167T Salmonella typhimurium Tryptophan Synthase in complex with with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, benzimidazole (BZI) at the enzyme beta site and cesium ion at the metal coordination site at 1.80 Angstrom resolution
Tryptophan synthase alpha chain
Toggle Identical (AC)Tryptophan synthase beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8y.1 | 1k8z.1 | 1kfj.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 | 2clo.1 | 2j9x.1 | 2j9y.1 more...less...2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6wx3.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7ki7.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l1h.1 | 7l47.1 | 7l4d.1 | 7l5h.1 | 7lev.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lut.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7m3s.2 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b05.1 | 8b06.1 | 8eyp.1 | 8eys.1 | 8ezc.1 | 8rsx.1 | 8rsy.1 | 8rsz.1