- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x F9F: 2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL DIHYDROGEN PHOSPHATE(Non-covalent)
F9F.3: 18 residues within 4Å:- Chain A: F.22, E.49, A.59, I.64, L.100, L.127, A.129, I.153, Y.175, T.183, G.184, F.212, G.213, I.232, S.233, G.234, S.235
- Chain B: P.18
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:L.100, A:L.127, A:Y.175, A:T.183
- Hydrogen bonds: A:G.184, A:F.212, A:G.213, A:G.234, A:S.235
- Water bridges: A:I.214, A:I.214, A:A.236
- pi-Stacking: A:F.212
F9F.25: 18 residues within 4Å:- Chain C: F.22, E.49, A.59, I.64, L.100, L.127, A.129, I.153, Y.175, T.183, G.184, F.212, G.213, I.232, S.233, G.234, S.235
- Chain D: P.18
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:L.100, C:L.127, C:Y.175, C:T.183
- Hydrogen bonds: C:Y.175, C:G.184, C:F.212, C:G.213, C:G.234, C:S.235
- Water bridges: C:I.214, C:I.214, C:A.236
- pi-Stacking: C:F.212
- 10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 5 residues within 4Å:- Chain A: D.112, A.113, A.116, R.117, Q.120
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.112, A:R.117, A:R.117, A:Q.120
- Water bridges: A:D.112, A:A.113
PEG.9: 4 residues within 4Å:- Chain B: T.3, L.4, L.5, N.6
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.3
- Water bridges: B:N.6, B:N.6
PEG.10: 4 residues within 4Å:- Chain B: T.328, D.330, E.331
- Ligands: BCN.16
3 PLIP interactions:3 interactions with chain B- Water bridges: B:D.330, B:D.330, B:K.360
PEG.11: 3 residues within 4Å:- Chain B: E.211, A.214, Q.215
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.218
PEG.12: 7 residues within 4Å:- Chain B: T.60, K.61, Q.63, E.343
- Chain D: N.51, Y.52, L.125
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.61, B:E.343
- Water bridges: B:L.59
PEG.26: 5 residues within 4Å:- Chain C: D.112, A.113, A.116, R.117, Q.120
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.117, C:R.117, C:Q.120
- Water bridges: C:D.112, C:A.113
PEG.31: 4 residues within 4Å:- Chain D: T.3, L.4, L.5, N.6
2 PLIP interactions:2 interactions with chain D- Water bridges: D:N.6, D:N.6
PEG.32: 4 residues within 4Å:- Chain D: T.328, D.330, E.331
- Ligands: BCN.38
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.328
- Water bridges: D:D.330, D:K.360
PEG.33: 3 residues within 4Å:- Chain D: E.211, A.214, Q.215
1 PLIP interactions:1 interactions with chain D- Water bridges: D:D.218
PEG.34: 7 residues within 4Å:- Chain B: N.51, Y.52, L.125
- Chain D: T.60, K.61, Q.63, E.343
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:K.61, D:E.343, D:E.343
- Water bridges: D:L.59
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 1 residues within 4Å:- Chain A: R.171
Ligand excluded by PLIPCL.6: 5 residues within 4Å:- Chain A: L.105, V.106, N.108, N.109, R.117
Ligand excluded by PLIPCL.17: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain A: N.157
- Chain B: I.20, P.23, Y.181
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain B: G.179, S.180, Y.181, E.182
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain B: D.225, S.249
Ligand excluded by PLIPCL.27: 1 residues within 4Å:- Chain C: R.171
Ligand excluded by PLIPCL.28: 5 residues within 4Å:- Chain C: L.105, V.106, N.108, N.109, R.117
Ligand excluded by PLIPCL.39: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.40: 4 residues within 4Å:- Chain C: N.157
- Chain D: I.20, P.23, Y.181
Ligand excluded by PLIPCL.41: 4 residues within 4Å:- Chain D: G.179, S.180, Y.181, E.182
Ligand excluded by PLIPCL.42: 2 residues within 4Å:- Chain D: D.225, S.249
Ligand excluded by PLIP- 2 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
0JO.8: 24 residues within 4Å:- Chain B: A.85, H.86, K.87, T.110, G.111, A.112, G.113, Q.114, H.115, L.166, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
26 PLIP interactions:26 interactions with chain B- Hydrophobic interactions: B:A.85, B:L.166, B:A.348, B:E.350
- Hydrogen bonds: B:K.87, B:G.111, B:A.112, B:G.113, B:Q.114, B:H.115, B:T.190, B:G.232, B:G.233, B:G.234, B:S.235, B:S.235, B:N.236, B:S.377
- Water bridges: B:E.109, B:T.190, B:A.237, B:G.303
- Salt bridges: B:H.86, B:K.87, B:K.87
- pi-Stacking: B:H.86
0JO.30: 24 residues within 4Å:- Chain D: A.85, H.86, K.87, T.110, G.111, A.112, G.113, Q.114, H.115, L.166, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, G.303, L.304, A.348, E.350, S.377, G.378
26 PLIP interactions:26 interactions with chain D- Hydrophobic interactions: D:A.85, D:L.166, D:A.348, D:E.350
- Hydrogen bonds: D:K.87, D:T.110, D:G.111, D:A.112, D:G.113, D:Q.114, D:H.115, D:G.232, D:G.233, D:G.234, D:S.235, D:S.235, D:N.236, D:S.377
- Water bridges: D:E.109, D:T.190, D:A.237, D:G.303
- Salt bridges: D:H.86, D:K.87, D:K.87
- pi-Stacking: D:H.86
- 6 x BCN: BICINE(Non-covalent)
BCN.14: 4 residues within 4Å:- Chain B: T.289, A.290, D.291, Q.293
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.289, B:D.291
- Water bridges: B:A.290, B:A.290
- Salt bridges: B:D.291
BCN.15: 9 residues within 4Å:- Chain B: T.248, S.249, V.250, G.251, L.252, G.320, R.321, A.322, D.323
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.249, B:L.252, B:L.252, B:R.321
- Salt bridges: B:R.321, B:D.323
BCN.16: 7 residues within 4Å:- Chain B: G.259, H.260, E.263, T.328, D.329, D.330
- Ligands: PEG.10
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.263, B:D.329, B:D.330, B:D.330
- Salt bridges: B:D.330
BCN.36: 4 residues within 4Å:- Chain D: T.289, A.290, D.291, Q.293
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.291, D:D.291
- Water bridges: D:A.290, D:A.290
- Salt bridges: D:D.291
BCN.37: 9 residues within 4Å:- Chain D: T.248, S.249, V.250, G.251, L.252, G.320, R.321, A.322, D.323
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:S.249, D:L.252, D:L.252, D:R.321
- Salt bridges: D:R.321, D:D.323
BCN.38: 7 residues within 4Å:- Chain D: G.259, H.260, E.263, T.328, D.329, D.330
- Ligands: PEG.32
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:E.263, D:T.328, D:D.329, D:D.330
- Water bridges: D:D.329
- Salt bridges: D:D.330
- 4 x CS: CESIUM ION(Non-covalent)
CS.21: 3 residues within 4Å:- Chain B: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.22: 6 residues within 4Å:- Chain B: V.231, G.232, G.268, L.304, F.306, S.308
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:F.306
CS.43: 3 residues within 4Å:- Chain D: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.44: 6 residues within 4Å:- Chain D: V.231, G.232, G.268, L.304, F.306, S.308
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:F.306
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site at 1.50 Angstrom resolution. Three water molecules are close to the amynoacrylate at the enzyme beta-site. To be Published
- Release Date
- 2021-12-29
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 7l1h.1
The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site at 1.50 Angstrom resolution. Three water molecules are close to the amynoacrylate at the enzyme beta-site
Tryptophan synthase alpha chain
Toggle Identical (AC)Tryptophan synthase beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8x.1 | 1k8y.1 | 1k8z.1 | 1kfc.1 | 1kfj.1 | 1kfk.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 more...less...2clo.1 | 2j9x.1 | 2j9y.1 | 2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6wx3.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7ki7.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l47.1 | 7l4d.1 | 7l5h.1 | 7lev.1 | 7lgx.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lut.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7m3s.2 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b03.1 | 8b05.1 | 8b06.1 | 8b08.1 | 8eyp.1 | 8eys.1 | 8ezc.1