- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x F9F: 2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL DIHYDROGEN PHOSPHATE(Non-covalent)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 5 residues within 4Å:- Chain A: F.107, N.108, G.110
- Chain B: R.275, V.276
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.110, B:V.276
PEG.13: 5 residues within 4Å:- Chain B: G.10, E.11, F.12, Y.315, S.318
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.318
PEG.25: 5 residues within 4Å:- Chain C: F.107, N.108, G.110
- Chain D: R.275, V.276
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:G.110, D:V.276
PEG.36: 5 residues within 4Å:- Chain D: G.10, E.11, F.12, Y.315, S.318
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.318
- 22 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 6 residues within 4Å:- Chain A: M.1, E.2, V.123, D.124, N.147
- Ligands: CL.4
Ligand excluded by PLIPCL.4: 4 residues within 4Å:- Chain A: E.119, V.123, N.147
- Ligands: CL.3
Ligand excluded by PLIPCL.5: 2 residues within 4Å:- Chain A: I.41, A.45
Ligand excluded by PLIPCL.6: 4 residues within 4Å:- Chain A: A.167, G.170, H.204, A.206
Ligand excluded by PLIPCL.17: 1 residues within 4Å:- Chain B: E.11
Ligand excluded by PLIPCL.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.19: 1 residues within 4Å:- Chain B: R.363
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain B: D.218, K.219, E.220, G.221
Ligand excluded by PLIPCL.21: 1 residues within 4Å:- Chain B: F.385
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain B: T.3, L.4, L.5, N.6
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain B: Q.36
- Ligands: DMS.15
Ligand excluded by PLIPCL.26: 6 residues within 4Å:- Chain C: M.1, E.2, V.123, D.124, N.147
- Ligands: CL.27
Ligand excluded by PLIPCL.27: 4 residues within 4Å:- Chain C: E.119, V.123, N.147
- Ligands: CL.26
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain C: I.41, A.45
Ligand excluded by PLIPCL.29: 4 residues within 4Å:- Chain C: A.167, G.170, H.204, A.206
Ligand excluded by PLIPCL.40: 1 residues within 4Å:- Chain D: E.11
Ligand excluded by PLIPCL.41: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.42: 1 residues within 4Å:- Chain D: R.363
Ligand excluded by PLIPCL.43: 4 residues within 4Å:- Chain D: D.218, K.219, E.220, G.221
Ligand excluded by PLIPCL.44: 1 residues within 4Å:- Chain D: F.385
Ligand excluded by PLIPCL.45: 4 residues within 4Å:- Chain D: T.3, L.4, L.5, N.6
Ligand excluded by PLIPCL.46: 2 residues within 4Å:- Chain D: Q.36
- Ligands: DMS.38
Ligand excluded by PLIP- 4 x CS: CESIUM ION(Non-covalent)
CS.7: 3 residues within 4Å:- Chain B: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.8: 6 residues within 4Å:- Chain B: V.231, G.232, E.256, G.268, P.270, S.308
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:G.232
CS.30: 3 residues within 4Å:- Chain D: T.66, T.69, T.71
No protein-ligand interaction detected (PLIP)CS.31: 6 residues within 4Å:- Chain D: V.231, G.232, E.256, G.268, P.270, S.308
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:G.232
- 2 x KOU: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine(Non-covalent)
KOU.9: 22 residues within 4Å:- Chain B: A.85, H.86, K.87, T.110, G.111, A.112, G.113, Q.114, H.115, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, A.302, G.303, L.304, E.350, S.377
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:A.85
- Hydrogen bonds: B:K.87, B:T.110, B:G.111, B:A.112, B:G.113, B:Q.114, B:H.115, B:G.232, B:G.233, B:G.234, B:S.235, B:N.236, B:N.236, B:A.302, B:S.377
- Water bridges: B:T.190, B:T.190, B:G.234, B:A.237
- Salt bridges: B:H.86, B:K.87, B:K.87
- pi-Stacking: B:H.86
KOU.32: 22 residues within 4Å:- Chain D: A.85, H.86, K.87, T.110, G.111, A.112, G.113, Q.114, H.115, T.190, C.230, V.231, G.232, G.233, G.234, S.235, N.236, A.302, G.303, L.304, E.350, S.377
23 PLIP interactions:23 interactions with chain D- Hydrophobic interactions: D:A.85
- Hydrogen bonds: D:K.87, D:G.111, D:A.112, D:G.113, D:Q.114, D:H.115, D:T.190, D:G.232, D:G.234, D:S.235, D:N.236, D:N.236, D:A.302, D:S.377
- Water bridges: D:G.233, D:G.233, D:G.234, D:A.237
- Salt bridges: D:H.86, D:K.87, D:K.87
- pi-Stacking: D:H.86
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 5 residues within 4Å:- Chain B: T.60, K.61
- Chain D: N.51, Y.52, L.125
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:K.61
- Water bridges: B:K.61, B:Q.63, B:Q.63, B:E.343, D:N.51, D:N.51
EDO.11: 5 residues within 4Å:- Chain B: I.65, T.338, H.342, M.362, R.363
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.65, B:H.342, B:R.363
EDO.12: 1 residues within 4Å:- Chain B: R.363
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.363
- Water bridges: B:R.363, B:R.363
EDO.33: 5 residues within 4Å:- Chain B: N.51, Y.52, L.125
- Chain D: T.60, K.61
7 PLIP interactions:5 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:K.61
- Water bridges: D:K.61, D:Q.63, D:Q.63, D:E.343, B:N.51, B:N.51
EDO.34: 5 residues within 4Å:- Chain D: I.65, T.338, H.342, M.362, R.363
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:I.65, D:H.342, D:R.363
EDO.35: 1 residues within 4Å:- Chain D: R.363
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.363
- Water bridges: D:R.363, D:R.363
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.14: 8 residues within 4Å:- Chain B: P.56, T.57, Q.215
- Chain D: K.50, G.54, R.55, P.56
- Ligands: DMS.37
1 PLIP interactions:1 interactions with chain B- Water bridges: B:Q.215
DMS.15: 6 residues within 4Å:- Chain B: Q.36, K.37, D.38, P.39, Q.42
- Ligands: CL.23
No protein-ligand interaction detected (PLIP)DMS.16: 5 residues within 4Å:- Chain B: Q.42, F.45, A.46, L.49, M.207
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.42
DMS.37: 8 residues within 4Å:- Chain B: K.50, G.54, R.55, P.56
- Chain D: P.56, T.57, Q.215
- Ligands: DMS.14
1 PLIP interactions:1 interactions with chain D- Water bridges: D:Q.215
DMS.38: 6 residues within 4Å:- Chain D: Q.36, K.37, D.38, P.39, Q.42
- Ligands: CL.46
No protein-ligand interaction detected (PLIP)DMS.39: 5 residues within 4Å:- Chain D: Q.42, F.45, A.46, L.49, M.207
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hilario, E. et al., The external aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.75 Angstrom resolution in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site. To be Published
- Release Date
- 2021-10-27
- Peptides
- Tryptophan synthase alpha chain: AC
Tryptophan synthase beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 7ki7.1
The external aldimine crystal structure of the beta-K167T mutant Tryptophan Synthase at 1.75 Angstrom resolution in complex with N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site and cesium ion at the metal coordination site
Tryptophan synthase alpha chain
Toggle Identical (AC)Tryptophan synthase beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a50.1 | 1a5s.1 | 1bks.1 | 1c29.1 | 1c8v.1 | 1c9d.1 | 1cw2.1 | 1cx9.1 | 1fuy.1 | 1k3u.1 | 1k7e.1 | 1k7f.1 | 1k7x.1 | 1k8y.1 | 1k8z.1 | 1kfj.1 | 1qoq.1 | 1tjp.1 | 1ttp.1 | 1ttq.1 | 1ubs.1 | 2cle.1 | 2clf.1 | 2clh.1 | 2cli.1 | 2cll.1 | 2clm.1 | 2clo.1 | 2j9x.1 | 2j9y.1 more...less...2rh9.1 | 2rhg.1 | 2trs.1 | 2tsy.1 | 2tys.1 | 2wsy.1 | 4hn4.1 | 4hpj.1 | 4hpx.1 | 4hpx.2 | 4ht3.1 | 4kkx.1 | 4wx2.1 | 4xug.1 | 4y6g.1 | 4zqc.1 | 5bw6.1 | 5cgq.1 | 6c73.1 | 6d0v.1 | 6duc.1 | 6dz4.1 | 6dzo.1 | 6o1h.1 | 6oso.1 | 6ouy.1 | 6vfd.1 | 6vnt.1 | 6wdu.1 | 6wx3.1 | 6x0c.1 | 6xe3.1 | 6xin.1 | 6xnc.1 | 6xoy.1 | 6xrh.1 | 6xsy.1 | 6xt0.1 | 7jhw.1 | 7jll.1 | 7jmq.1 | 7jmq.2 | 7jqw.1 | 7jtt.1 | 7k0b.1 | 7k5a.1 | 7ka1.1 | 7kbn.1 | 7kh6.1 | 7kmc.1 | 7kq9.1 | 7kqf.1 | 7ku9.1 | 7kwv.1 | 7kxc.1 | 7kyt.1 | 7l03.1 | 7l1h.1 | 7l47.1 | 7l4d.1 | 7l5h.1 | 7lev.1 | 7lgx.1 | 7lkl.1 | 7lpf.1 | 7lt4.1 | 7ltp.1 | 7lut.1 | 7lv5.1 | 7lvx.1 | 7lx1.1 | 7ly8.1 | 7m2l.1 | 7m3s.1 | 7m3s.2 | 7me8.1 | 7mt4.1 | 7mt5.1 | 7mt6.1 | 8b05.1 | 8b06.1 | 8eyp.1 | 8eys.1 | 8ezc.1 | 8rsx.1 | 8rsy.1 | 8rsz.1