SMTL ID : 6zqg.1

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x U- U- U- U- U- U- U- U- U: Poly-U RNA(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
39 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Cheng, J. et al., 90 S pre-ribosome transformation into the primordial 40 S subunit. Science (2020)
Release Date
2020-09-23
Peptides
Nucleolar complex protein 14: A
Something about silencing protein 10: B
Noc4,Nucleolar complex protein 4,Noc4: C
rRNA-processing protein FCF1: D
U3 small nucleolar ribonucleoprotein protein IMP4: E
U3 small nucleolar RNA-associated protein MPP10: F
Ribosome biogenesis protein BMS1: G
RNA 3'-terminal phosphate cyclase-like protein: H
Ribosomal RNA small subunit methyltransferase NEP1: IJ
Essential nuclear protein 1: K
Dimethyladenosine transferase: L
Pre-rRNA-processing protein PNO1: M
Rps5p: N
40S ribosomal protein S16-A: O
40S ribosomal protein S18-A,40S ribosomal protein S18-A,Rps18: P
40S ribosomal protein S19-A: Q
40S ribosomal protein S28-A: R
40S ribosomal protein S1-A: T
40S ribosomal protein S4-A: U
40S ribosomal protein S6-A: V
40S ribosomal protein S7-A: W
40S ribosomal protein S8-A: X
40S ribosomal protein S9-A: Y
40S ribosomal protein S11-A: Z
40S ribosomal protein S13: 0
40S ribosomal protein S14-A: 1
40S ribosomal protein S25-A: 2
40S ribosomal protein S22-A: 3
40S ribosomal protein S23-A: 4
40S ribosomal protein S24-A: 5
40S ribosomal protein S27-A: 6
U3 small nucleolar RNA-associated protein 14: 7
Probable ATP-dependent RNA helicase DHR1: 8
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
UB
B
UC
C
US
D
UX
E
CJ
F
CK
G
CL
H
CM
I
JF
J
JG
K
JH
L
JL
M
JJ
N
DF
O
DQ
P
DS
Q
DT
R
Dc
T
DA
U
DE
V
DG
W
DH
X
DI
Y
DJ
Z
DL
0
DN
1
DO
2
DZ
3
DW
4
DX
5
DY
6
Db
7
UN
8
JD

Nucleolar complex protein 14

Something about silencing protein 10

Noc4,Nucleolar complex protein 4,Noc4

rRNA-processing protein FCF1

U3 small nucleolar ribonucleoprotein protein IMP4

U3 small nucleolar RNA-associated protein MPP10

Ribosome biogenesis protein BMS1

RNA 3'-terminal phosphate cyclase-like protein

Ribosomal RNA small subunit methyltransferase NEP1

Essential nuclear protein 1

Dimethyladenosine transferase

Pre-rRNA-processing protein PNO1

Rps5p

40S ribosomal protein S16-A

40S ribosomal protein S18-A,40S ribosomal protein S18-A,Rps18

40S ribosomal protein S19-A

40S ribosomal protein S28-A

40S ribosomal protein S1-A

40S ribosomal protein S4-A

40S ribosomal protein S6-A

40S ribosomal protein S7-A

40S ribosomal protein S8-A

40S ribosomal protein S9-A

40S ribosomal protein S11-A

40S ribosomal protein S13

40S ribosomal protein S14-A

40S ribosomal protein S25-A

40S ribosomal protein S22-A

40S ribosomal protein S23-A

40S ribosomal protein S24-A

40S ribosomal protein S27-A

U3 small nucleolar RNA-associated protein 14

Probable ATP-dependent RNA helicase DHR1

Related Entries With Identical Sequence

3j16.1 | 3j6x.44 | 3j6x.47 | 3j6x.48 | 3j6x.49 | 3j6x.50 | 3j6x.51 | 3j6x.52 | 3j6x.54 | 3j6x.56 | 3j6x.57 | 3j6x.59 | 3j6x.62 | 3j6x.65 | 3j6x.66 | 3j6x.67 | 3j6x.68 | 3j6x.70 | 3j6x.71 | 3j6y.44 | 3j6y.47 | 3j6y.48 | 3j6y.49 | 3j6y.50 | 3j6y.51 | 3j6y.52 | 3j6y.54 | 3j6y.56 | 3j6y.57 | 3j6y.59  more...