SMTL ID : 7cia.1

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

2 x MPB: 4-HYDROXY-BENZOIC ACID METHYL ESTER(Non-covalent)

MPB.1: 10 residues within 4Å: Chain A: A.84, F.152, F.176, I.243, L.246, Y.247, S.252, L.253, I.294, Y.296 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.84, A:I.294 Hydrogen bonds: A:L.253 pi-Stacking: A:F.152 MPB.2: 9 residues within 4Å: Chain A: M.62, T.190, F.191, G.192, M.194, I.197, G.209, A.214, V.216 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.197, A:A.214

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.78, T.190, H.237, D.241 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, Y. et al., Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity. J.Med.Chem. (2020)

Release Date

2020-12-02

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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