- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-1-1-1-1-1-mer
- Ligands
- 4 x 1N7: CHAPSO
- 1 x MG: MAGNESIUM ION
- 3 x ZN: ZINC ION
ZN.4: 4 residues within 4Å:- Chain D: C.70, C.72, C.85, C.88
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.70, D:C.72, D:C.85, D:C.88
ZN.5: 5 residues within 4Å:- Chain D: C.814, R.883, C.888, C.895, C.898
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.814, D:C.888, D:C.895, D:C.898
ZN.9: 5 residues within 4Å:- Chain I: C.114, C.117, V.119, C.135, C.138
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:C.114, I:C.117, I:C.135, I:C.138
- 2 x G4P: GUANOSINE-5',3'-TETRAPHOSPHATE
G4P.6: 10 residues within 4Å:- Chain D: R.362, H.364, R.417, V.618, I.619, D.622, Q.623
- Chain E: A.2, R.3, V.4
10 PLIP interactions:6 interactions with chain D, 4 interactions with chain E- Hydrogen bonds: D:R.417, D:D.622, D:Q.623, E:A.2, E:R.3
- Salt bridges: D:K.615, D:D.622, E:R.3, E:R.3
- pi-Cation interactions: D:R.362
G4P.10: 10 residues within 4Å:- Chain D: N.680, D.684
- Chain I: R.87, R.91, E.92, K.94, L.95, K.98, R.129, K.139
10 PLIP interactions:8 interactions with chain I, 2 interactions with chain D- Hydrogen bonds: I:R.91, I:R.91, I:R.91, D:N.680
- Salt bridges: I:R.87, I:K.98, I:K.98, I:R.129, I:K.139, D:D.684
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Shin, Y. et al., Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp. To Be Published
- Release Date
- 2020-10-28
- Peptides
- DNA-directed RNA polymerase subunit alpha: AB
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor RpoD: F
RNA polymerase-binding transcription factor DksA: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FI
M
SMTL ID : 7khi.1
Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta'
DNA-directed RNA polymerase subunit omega
RNA polymerase sigma factor RpoD
RNA polymerase-binding transcription factor DksA
Related Entries With Identical Sequence
1tjl.1 | 1tjl.2 | 1tjl.3 | 1tjl.4 | 1tjl.5 | 1tjl.6 | 1tjl.7 | 1tjl.8 | 1tjl.9 | 1tjl.10 | 1tjl.11 | 3iyd.1 | 3lu0.1 | 4jk1.1 | 4jk1.2 | 4jk2.1 | 4jk2.2 | 4jkr.1 | 4jkr.2 | 4kmu.1 | 4kmu.2 | 4kn4.1 | 4kn4.2 | 4kn7.1 | 4kn7.2 | 4ljz.1 | 4ljz.2 | 4lk0.1 | 4lk0.2 | 4lk1.1 more...less...4lk1.2 |
4llg.1 |
4llg.2 |
4mex.1 |
4mex.2 |
4mey.1 |
4mey.2 |
4s20.1 |
4s20.2 |
4xsx.1 |
4xsx.2 |
4xsy.1 |
4xsy.2 |
4xsz.1 |
4xsz.2 |
4yfk.1 |
4yfk.2 |
4yfn.1 |
4yfn.2 |
4yfx.1 |
4yfx.2 |
4yg2.1 |
4yg2.2 |
4yln.1 |
4yln.2 |
4yln.3 |
4ylo.1 |
4ylo.2 |
4ylo.3 |
4ylp.1 |
4ylp.2 |
4ylp.3 |
4zh2.1 |
4zh2.2 |
4zh3.1 |
4zh3.2 |
4zh4.1 |
4zh4.2 |
5byh.1 |
5ezk.1 |
5ipl.1 |
5ipm.1 |
5ipn.1 |
5ms0.1 |
5my1.1 |
5nsr.1 |
5nss.1 |
5nwt.1 |
5tbz.1 |
5tbz.2 |
5uac.1 |
5uac.2 |
5uag.1 |
5uag.2 |
5uah.1 |
5uah.2 |
5uaj.1 |
5uaj.2 |
5ual.1 |
5ual.2 |
5uaq.1 |
5uaq.2 |
5ui8.1 |
5vsw.1 |
5vsw.2 |
5vt0.1 |
5w1s.1 |
5w1s.2 |
5w1t.1 |
5w1t.2 |
6alf.1 |
6alg.1 |
6alh.1 |
6asx.1 |
6b6h.1 |
6bjs.1 |
6byu.1 |
6byu.2 |
6c6s.1 |
6c6t.1 |
6c6u.1 |
6c9y.1 |
6ca0.1 |
6cux.1 |
6cux.2 |
6flp.1 |
6flq.1 |
6gfw.1 |
6gh5.1 |
6gh6.1 |
6gov.1 |
6jbq.1 |
6jnx.1 |
6k4y.1 |
6kj6.1 |
6ldi.1 |
6n57.1 |
6n58.1 |
6n60.1 |
6n61.1 |
6n62.1 |
6omf.1 |
6oul.1 |
6p18.1 |
6p19.1 |
6p1k.1 |
6pb4.1 |
6pb5.1 |
6pb6.1 |
6pmi.1 |
6pmj.1 |
6psq.1 |
6psr.1 |
6pss.1 |
6pst.1 |
6psu.1 |
6psv.1 |
6psw.1 |
6r9b.1 |
6r9g.1 |
6rh3.1 |
6ri7.1 |
6ri9.1 |
6rin.1 |
6rip.1 |
6tqn.1 |
6tqo.1 |
6utv.1 |
6utw.1 |
6utx.1 |
6uty.1 |
6utz.1 |
6uu0.1 |
6uu1.1 |
6uu2.1 |
6uu3.1 |
6uu4.1 |
6uu5.1 |
6uu6.1 |
6uu7.1 |
6uu8.1 |
6uu9.1 |
6uua.1 |
6uub.1 |
6uuc.1 |
6vjs.1 |
6vjs.2 |
6vu3.7 |
6vu3.11 |
6vyq.11 |
6vyr.7 |
6vyr.11 |
6vys.7 |
6vyt.6 |
6vyt.10 |
6vyu.6 |
6vyu.10 |
6vyu.11 |
6vyw.6 |
6vyw.11 |
6vyx.6 |
6vyx.11 |
6vyy.6 |
6vyy.10 |
6vyy.11 |
6vyz.6 |
6vyz.11 |
6vz2.6 |
6vz2.10 |
6vz2.11 |
6vz3.6 |
6vz5.6 |
6vz5.10 |
6vz5.11 |
6vzj.7 |
6wmu.1 |
6x6t.7 |
6x6t.11 |
6x6t.12 |
6x7f.7 |
6x7f.11 |
6x7f.12 |
6x7k.7 |
6x7k.11 |
6x7k.12 |
6x9q.7 |
6x9q.11 |
6x9q.12 |
6xas.1 |
6xav.1 |
6xdq.7 |
6xdq.11 |
6xdq.12 |
6xdr.7 |
6xdr.11 |
6xdr.12 |
6xgf.7 |
6xgf.11 |
6xgf.12 |
6xii.7 |
6xii.11 |
6xii.12 |
6xij.7 |
6xij.11 |
6z9p.1 |
6z9q.1 |
6z9r.1 |
6z9s.1 |
6z9t.1 |
6ztj.55 |
6ztj.56 |
6ztj.57 |
6ztl.1 |
6ztm.1 |
6ztn.51 |
6ztn.52 |
6ztn.53 |
6zto.1 |
6ztp.1 |
6zu1.1 |
7adb.1 |
7adc.1 |
7add.1 |
7ade.1 |
7c17.1 |
7c97.1 |
7chw.1 |
7d7c.1 |
7d7d.1 |
7khb.1 |
7khc.1 |
7khe.1