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SMTL ID : 8egb.1

Cryo-EM structure of consensus elemental paused elongation complex with an unfolded TL

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-mer

Ligands

2 x 1N7: CHAPSO(Non-covalent)

1N7.1:	10 residues within 4Å: Chain F: Q.46, Y.47, Y.179, S.398, A.399, V.400, R.452, E.458, E.583, Y.584 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:Q.46, F:Y.179, F:A.399, F:Y.584 Hydrogen bonds: F:Q.46, F:A.399, F:V.400
1N7.2:	7 residues within 4Å: Chain D: D.135 Chain F: Q.725, Y.726, E.962, Q.965, I.966, A.969 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:Q.725, F:Y.726, F:Y.726, F:Y.726, F:E.962, F:Q.965, F:A.969 Hydrogen bonds: F:Q.965

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

5 residues within 4Å:

Chain C: G.16, C.17
Chain G: D.460, D.462, D.464

4 PLIP interactions:

4 interactions with chain G

Metal complexes: G:D.460, G:D.462, G:D.464, G:D.464

2 x ZN: ZINC ION(Non-covalent)

ZN.4:	4 residues within 4Å: Chain G: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.70, G:C.72, G:C.85, G:C.88
ZN.5:	4 residues within 4Å: Chain G: C.814, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.814, G:C.888, G:C.895, G:C.898

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kang, J.Y. et al., An ensemble of interconverting conformations of the elemental paused transcription complex creates regulatory options. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-03-01

Peptides

DNA-directed RNA polymerase subunit alpha: DE
DNA-directed RNA polymerase subunit beta: F
DNA-directed RNA polymerase subunit beta': G
DNA-directed RNA polymerase subunit omega: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
G

E
H

F
I

G
J

H
K

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

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3iyd.1 | 3lu0.1 | 4jk1.1 | 4jk1.2 | 4jk2.1 | 4jk2.2 | 4jkr.1 | 4jkr.2 | 4kmu.1 | 4kmu.2 | 4kn4.1 | 4kn4.2 | 4kn7.1 | 4kn7.2 | 4ljz.1 | 4ljz.2 | 4lk0.1 | 4lk0.2 | 4lk1.1 | 4lk1.2 | 4llg.1 | 4llg.2 | 4mex.1 | 4mex.2 | 4mey.1 | 4mey.2 | 4s20.1 | 4s20.2 | 4xsx.1 | 4xsx.2 more...less...

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