SMTL ID : 7w5w.1

Cryo-EM structure of SoxS-dependent transcription activation complex with micF promoter DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain D: C.70, L.71, C.72, G.73, C.85, C.88 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:C.88 ZN.2: 5 residues within 4Å: Chain D: C.888, V.894, C.895, A.896, C.898 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.888, D:C.895, D:C.895

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain D: I.355, A.459, D.460, F.461, D.464 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.460, D:D.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, J. et al., Structural basis of three different transcription activation strategies adopted by a single regulator SoxS. Nucleic Acids Res. (2022)

Release Date

2022-10-26

Peptides

DNA-directed RNA polymerase subunit alpha: AB
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor RpoD: F
Regulatory protein SoxS: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

I
J

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

RNA polymerase sigma factor RpoD

Regulatory protein SoxS

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