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SMTL ID : 7ubn.1

Transcription antitermination complex: NusA-containing "engaged" Qlambda-loading complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1:	4 residues within 4Å: Chain F: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.70, F:C.72, F:C.85, F:C.88
ZN.2:	5 residues within 4Å: Chain F: C.814, G.815, T.816, R.883, D.889 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:C.814, F:C.814, F:G.815
ZN.4:	4 residues within 4Å: Chain J: C.118, C.121, C.144, C.147 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.118, J:C.121, J:C.144, J:C.147

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

4 residues within 4Å:

Chain F: D.460, D.462, D.464
Chain K: A.11

4 PLIP interactions:

4 interactions with chain F

Metal complexes: F:D.460, F:D.462, F:D.464, F:D.464

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Yin, Z. et al., In transcription antitermination by Q lambda , NusA induces refolding of Q lambda to form a nozzle that extends the RNA polymerase RNA-exit channel. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-09-28

Peptides

DNA-directed RNA polymerase subunit alpha: CD
DNA-directed RNA polymerase subunit beta: E
DNA-directed RNA polymerase subunit beta': F
DNA-directed RNA polymerase subunit omega: G
RNA polymerase sigma factor RpoD: H
Transcription termination/antitermination protein NusA: I
Antitermination protein: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

E
C

F
D

G
E

H
F

I
N

J
Q

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

RNA polymerase sigma factor RpoD

Transcription termination/antitermination protein NusA

Antitermination protein

Related Entries With Identical Sequence

3iyd.1 | 3lu0.1 | 4jk1.1 | 4jk1.2 | 4jk2.1 | 4jk2.2 | 4jkr.1 | 4jkr.2 | 4kmu.1 | 4kmu.2 | 4kn4.1 | 4kn4.2 | 4kn7.1 | 4kn7.2 | 4ljz.1 | 4ljz.2 | 4lk0.1 | 4lk0.2 | 4lk1.1 | 4lk1.2 | 4llg.1 | 4llg.2 | 4mex.1 | 4mex.2 | 4mey.1 | 4mey.2 | 4s20.1 | 4s20.2 | 4xsx.1 | 4xsx.2 more...less...

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