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SMTL ID : 8ftd.1

Structure of Escherichia coli CedA in complex with transcription initiation complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-1-1-1-1-mer

Ligands

3 x 1N7: CHAPSO(Non-covalent)

1N7.1:	8 residues within 4Å: Chain A: E.72, D.135, E.136 Chain C: Q.725, Y.726, E.962, Q.965, I.966 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:Y.726, C:I.966 Hydrogen bonds: C:Q.725, C:E.962, C:Q.965, A:E.136
1N7.5:	4 residues within 4Å: Chain D: L.255, D.256 Chain F: F.517 Ligands: 1N7.6 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: D:L.255, F:F.517 Hydrogen bonds: D:D.256, D:D.256
1N7.6:	7 residues within 4Å: Chain D: L.255, R.259 Chain F: I.500, P.505, I.506, G.507 Ligands: 1N7.5 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: D:L.255 Hydrogen bonds: D:R.259, F:G.507

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

3 residues within 4Å:

Chain D: D.460, D.462, D.464

3 PLIP interactions:

3 interactions with chain D

Metal complexes: D:D.462, D:D.464, D:D.464

2 x ZN: ZINC ION(Non-covalent)

ZN.3:	4 residues within 4Å: Chain D: C.70, C.72, C.85, C.88 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.70, D:C.72, D:C.85, D:C.88
ZN.4:	5 residues within 4Å: Chain D: C.814, R.883, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.814, D:C.888, D:C.895, D:C.898

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Vasilyev, N. et al., General transcription factor from Escherichia coli with a distinct mechanism of action. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-01-10

Peptides

DNA-directed RNA polymerase subunit alpha: ABI
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor RpoD: F
Cell division activator CedA: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

I
R

C
I

D
J

E
K

F
L

J
Z

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

RNA polymerase sigma factor RpoD

Cell division activator CedA

Related Entries With Identical Sequence

3iyd.1 | 3lu0.1 | 4jk1.1 | 4jk1.2 | 4jk2.1 | 4jk2.2 | 4jkr.1 | 4jkr.2 | 4kmu.1 | 4kmu.2 | 4kn4.1 | 4kn4.2 | 4kn7.1 | 4kn7.2 | 4ljz.1 | 4ljz.2 | 4lk0.1 | 4lk0.2 | 4lk1.1 | 4lk1.2 | 4llg.1 | 4llg.2 | 4mex.1 | 4mex.2 | 4mey.1 | 4mey.2 | 4s20.1 | 4s20.2 | 4xsx.1 | 4xsx.2 more...less...

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