SMTL ID : 7sr8.1

Molecular mechanism of the the wake-promoting agent TAK-925

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x A6F: methyl (2R,3S)-3-[(methanesulfonyl)amino]-2-({[(1s,4S)-4-phenylcyclohexyl]oxy}methyl)piperidine-1-carboxylate(Non-covalent)

A6F.1: 13 residues within 4Å: Chain E: A.109, T.110, V.113, W.119, P.130, Q.133, T.134, V.137, F.226, I.319, N.323, F.345, H.349 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:P.130, E:V.137, E:V.137, E:F.226, E:I.319 Hydrogen bonds: E:Q.133, E:Q.133, E:N.323

4 x OLA: OLEIC ACID(Non-functional Binders)(Non-covalent)

OLA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) OLA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) OLA.4: 3 residues within 4Å: Chain E: L.142, S.171, A.233 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:L.142, E:A.233 Salt bridges: E:R.167 OLA.5: 2 residues within 4Å: Chain E: W.152, Y.153 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, J. et al., Molecular mechanism of the wake-promoting agent TAK-925. Nat Commun (2022)

Release Date

2022-06-08

Peptides

a modified Guanine nucleotide-binding protein G(q) subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
scFv16: D
Hypocretin receptor type 2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
E

E
R

Membrane

We predict this structure to be a membrane protein.
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a modified Guanine nucleotide-binding protein G(q) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

Hypocretin receptor type 2

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