8b5l.1 | SWISS-MODEL Template Library

SMTL ID : 8b5l.1

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

178 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

5 x ZN: ZINC ION(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pauwels, E. et al., Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative. Sci Adv (2023)

Release Date

2023-03-01

Peptides

60S ribosomal protein L35: A
60S ribosomal protein L17: B
60S ribosomal protein L31: C
60S ribosomal protein L7a: E
Ribosomal protein L32: F
Signal sequence receptor subunit 3: G
60S ribosomal protein L18a: H
Ribosomal protein L10: I
Ribosomal_L18_c domain-containing protein: J
60S ribosomal protein L23: K
60S ribosomal protein L6: L
60S ribosomal protein L11: M
Translocon-associated protein subunit alpha: N
60S ribosomal protein L38: O
60S ribosomal protein L29: P
Ubiquitin-60S ribosomal protein L40: Q
60S ribosomal protein L27: R
60S ribosomal protein L21: S
60S ribosomal protein L36: T
60S ribosomal protein L7: U
60S ribosomal protein L41: V
60S ribosomal protein L13: W
60S ribosomal protein L13a: X
60S ribosomal protein L4: Z
Ribosomal protein L26: 0
Ribosomal protein L3: 1
Ribosomal protein L19: 2
Ribosomal_L23eN domain-containing protein: 3
60S ribosomal protein L37a: 4
60S ribosomal protein L14: 5
60S ribosomal protein L9: 6
60S ribosomal protein L28: 8
Ribosomal protein L18: 9
60S ribosomal protein L35a: a
60S ribosomal protein L27a: b
Ribosomal protein L8: c
60S ribosomal protein L34: d
Translocon-associated protein subunit delta: e
Protein transport protein Sec61 subunit gamma: f
Translocon-associated protein subunit beta: g
Ribosomal protein L37: h
Ribosomal protein L15: i
60S ribosomal protein L36a-like: j
Protein transport protein Sec61 subunit alpha isoform 1: k
60S ribosomal protein L30: l
Ribosomal protein L24: m
60S ribosomal protein L39-like: n
60S ribosomal protein L22: o

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
h

B
P

C
d

E
G

F
e

G
t

H
S

I
I

J
D

K
V

L
E

M
J

N
q

O
k

P
b

Q
m

R
Z

S
T

T
i

U
F

V
n

W
L

X
O

Z
C

0
Y

1
B

2
R

3
X

4
p

5
M

6
H

8
r

9
Q

a
f

b
a

c
A

d
g

e
K

f
u

g
v

h
j

i
N

j
o

k
s

l
c

m
W

n
l

o
U

Membrane

We predict this structure to be a membrane protein.
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60S ribosomal protein L35

60S ribosomal protein L17

60S ribosomal protein L31

60S ribosomal protein L7a

Ribosomal protein L32

Signal sequence receptor subunit 3

60S ribosomal protein L18a

Ribosomal protein L10

Ribosomal_L18_c domain-containing protein

60S ribosomal protein L23

60S ribosomal protein L6

60S ribosomal protein L11

Translocon-associated protein subunit alpha

60S ribosomal protein L38

60S ribosomal protein L29

Ubiquitin-60S ribosomal protein L40

60S ribosomal protein L27

60S ribosomal protein L21

60S ribosomal protein L36

60S ribosomal protein L7

60S ribosomal protein L41

60S ribosomal protein L13

60S ribosomal protein L13a

60S ribosomal protein L4

Ribosomal protein L26

Ribosomal protein L3

Ribosomal protein L19

Ribosomal_L23eN domain-containing protein

60S ribosomal protein L37a

60S ribosomal protein L14

60S ribosomal protein L9

60S ribosomal protein L28

Ribosomal protein L18

60S ribosomal protein L35a

60S ribosomal protein L27a

Ribosomal protein L8

60S ribosomal protein L34

Translocon-associated protein subunit delta

Protein transport protein Sec61 subunit gamma

Translocon-associated protein subunit beta

Ribosomal protein L37

Ribosomal protein L15

60S ribosomal protein L36a-like

Protein transport protein Sec61 subunit alpha isoform 1

60S ribosomal protein L30

Ribosomal protein L24

60S ribosomal protein L39-like

60S ribosomal protein L22

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