8b6c.1 | SWISS-MODEL Template Library

SMTL ID : 8b6c.1

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

178 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

5 x ZN: ZINC ION(Non-covalent)

1 x OWI: 4-[[9-(cyclohexylmethyl)-3-methylidene-5-(4-methylphenyl)sulfonyl-1,5,9-triazacyclododec-1-yl]sulfonyl]-~{N},~{N}-dimethyl-aniline(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pauwels, E. et al., Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative. Sci Adv (2023)

Release Date

2023-02-22

Peptides

60S ribosomal protein L21: A
60S ribosomal protein L7: C
Ribosomal_L18_c domain-containing protein: D
60S ribosomal protein L18a: E
60S ribosomal protein L29: F
Ribosomal protein L3: G
60S ribosomal protein L31: H
60S ribosomal protein L7a: J
60S ribosomal protein L11: K
60S ribosomal protein L30: L
Ribosomal protein L37: M
Ribosomal protein L8: N
Ribosomal protein L10: O
Protein transport protein Sec61 subunit gamma: P
60S ribosomal protein L37a: Q
60S ribosomal protein L23: R
60S ribosomal protein L40: S
60S ribosomal protein L39-like: T
60S ribosomal protein L17: U
60S ribosomal protein L6: V
eL18: W
60S ribosomal protein L19: X
Ribosomal protein L24: Y
60S ribosomal protein L13a: Z
Protein transport protein Sec61 subunit alpha isoform 1: 0
60S ribosomal protein L4: 1
60S ribosomal protein L36a-like: 2
60S ribosomal protein L28: 3
60S ribosomal protein L35a: 4
Ribosomal protein L32: 5
60S ribosomal protein L27: 6
60S ribosomal protein L27a: 7
60S ribosomal protein L34: 8
60S ribosomal protein L38: 9
60S ribosomal protein L9: a
60S ribosomal protein L13: b
Ribosomal protein L15: d
60S ribosomal protein L36: e
60S ribosomal protein L35: f
60S ribosomal protein L14: g
Ribosomal protein L26: h
Ribosomal_L23eN domain-containing protein: i
60S ribosomal protein L22 (Fragment): j
60S ribosomal protein L41: k

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

C
F

D
D

E
S

F
b

G
B

H
d

J
G

K
J

L
c

M
j

N
A

O
I

P
q

Q
p

R
V

S
m

T
l

U
P

V
E

W
Q

X
R

Y
W

Z
O

0
K

1
C

2
o

3
r

4
f

5
e

6
Z

7
a

8
g

9
k

a
H

b
L

d
N

e
i

f
h

g
M

h
Y

i
X

j
U

k
n

Membrane

We predict this structure to be a membrane protein.
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60S ribosomal protein L21

60S ribosomal protein L7

Ribosomal_L18_c domain-containing protein

60S ribosomal protein L18a

60S ribosomal protein L29

Ribosomal protein L3

60S ribosomal protein L31

60S ribosomal protein L7a

60S ribosomal protein L11

60S ribosomal protein L30

Ribosomal protein L37

Ribosomal protein L8

Ribosomal protein L10

Protein transport protein Sec61 subunit gamma

60S ribosomal protein L37a

60S ribosomal protein L23

60S ribosomal protein L40

60S ribosomal protein L39-like

60S ribosomal protein L17

60S ribosomal protein L6

eL18

60S ribosomal protein L19

Ribosomal protein L24

60S ribosomal protein L13a

Protein transport protein Sec61 subunit alpha isoform 1

60S ribosomal protein L4

60S ribosomal protein L36a-like

60S ribosomal protein L28

60S ribosomal protein L35a

Ribosomal protein L32

60S ribosomal protein L27

60S ribosomal protein L27a

60S ribosomal protein L34

60S ribosomal protein L38

60S ribosomal protein L9

60S ribosomal protein L13

Ribosomal protein L15

60S ribosomal protein L36

60S ribosomal protein L35

60S ribosomal protein L14

Ribosomal protein L26

Ribosomal_L23eN domain-containing protein

60S ribosomal protein L22 (Fragment)

60S ribosomal protein L41

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