SMTL ID : 8e4a.1

Pseudomonas LpxC in complex with LPC-233

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.77, H.78, H.237, D.241 Ligands: UFX.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241, H2O.3

1 x UFX: 4-(4-cyclopropylbuta-1,3-diyn-1-yl)-N-[(2S,3S)-4,4-difluoro-3-hydroxy-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]benzamide(Non-covalent)

UFX.2: 18 residues within 4Å: Chain A: M.62, S.63, E.77, T.190, F.191, G.192, I.197, L.200, R.201, A.206, G.209, S.210, A.214, H.237, K.238, D.241, H.264 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.190, A:F.191, A:I.197, A:I.197, A:L.200, A:A.206, A:A.214 Hydrogen bonds: A:M.62, A:E.77, A:T.190, A:F.191, A:F.191, A:D.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, J. et al., Preclinical safety and efficacy characterization of an LpxC inhibitor against Gram-negative pathogens. Sci Transl Med (2023)

Release Date

2023-08-23

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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