SMTL ID : 8fhg.1

Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and ZINC5672437

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x XZK: N-(4-carbamoylphenyl)-2-chloro-5-nitrobenzamide(Covalent)

XZK.1: 15 residues within 4Å: Chain A: I.79, F.80, C.83, Q.84, H.121, Y.125, F.161, M.162, K.165, V.244, H.247, L.250, Y.271, L.274, Y.275 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.79, A:F.80, A:F.80, A:Q.84, A:H.247, A:L.274, A:Y.275, A:Y.275 Hydrogen bonds: A:Q.84, A:Y.275 Water bridges: A:H.121, A:H.121 pi-Stacking: A:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacTavish, B.S. et al., Ligand efficacy shifts a nuclear receptor conformational ensemble between transcriptionally active and repressive states. Nat Commun (2025)

Release Date

2024-03-20

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 1

Related Entries With Identical Sequence