SMTL ID : 8fhl.1

Structure of pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- GLY- PRO- ARG- ALA- LEU- ASP- VAL- LEU: Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial(Non-covalent)

ILE-GLY-PRO-ARG-ALA-LEU-ASP-VAL-LEU.1: 25 residues within 4Å: Chain A: Y.7, Y.59, R.62, E.63, R.66, G.69, N.70, S.73, F.74, D.77, Y.84, W.97, A.99, W.114, Y.123, T.143, K.146, W.147, A.150, A.152, R.155, Y.159, E.163, W.167, Y.171 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:Y.59, A:R.62, A:F.74, A:D.77, A:W.97, A:A.99, A:W.114, A:Y.123, A:T.143, A:W.147, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:E.63, A:R.66, A:N.70, A:N.70, A:S.73, A:S.73, A:S.73, A:D.77, A:Y.84, A:K.146, A:E.163 Salt bridges: A:R.155

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.29, L.179, Y.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.209, A:Y.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Custodio, J.M.F. et al., Structure of Pyruvate dehydrogenase phosphatase regulatory subunit neoepitope presented by H2-Dd. To Be Published

Release Date

2023-06-28

Peptides

H-2 class I histocompatibility antigen, D-D alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-D alpha chain

Beta-2-microglobulin

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