SMTL ID : 8rlu.1 (1 other biounit)

TCR in complex with HLA-E*01:03 bound to HBV envelope 371-379 S3N peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ILE- LEU- ASN- PRO- PHE- LEU- PRO- LEU- LEU: Large envelope protein(Non-covalent)

ILE-LEU-ASN-PRO-PHE-LEU-PRO-LEU-LEU.1: 49 residues within 4Å: Chain A: L.5, Y.7, H.9, S.24, F.33, M.45, Y.59, R.62, E.63, S.66, A.67, D.69, T.70, I.73, F.74, V.76, N.77, T.80, L.81, Y.84, L.95, W.97, H.99, E.114, F.116, Y.123, L.124, W.133, S.143, K.146, S.147, E.152, H.155, Q.156, A.158, Y.159, T.163, W.167, Y.171 Chain C: V.32, S.33, Y.52, H.95 Chain D: Y.30, Y.32, R.96, N.97, L.99, T.100 34 PLIP interactions: 28 interactions with chain A, 2 interactions with chain D, 4 interactions with chain C Hydrophobic interactions: A:Y.7, A:Y.59, A:A.67, A:I.73, A:I.73, A:L.95, A:W.97, A:F.116, A:Y.123, A:L.124, A:E.152, A:H.155, A:Y.159, A:T.163, A:W.167, D:R.96, C:V.32, C:Y.52, C:Y.52 Hydrogen bonds: A:Y.7, A:E.63, A:N.77, A:N.77, A:S.143, A:Q.156, A:Q.156, A:Y.159, A:Y.171, D:N.97 Water bridges: A:Y.59, A:S.66, A:H.99, C:H.95 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pengelly, R.J. et al., TCR in complex with HLA-E*01:03 bound to HBV envelope 371-379 S3N peptide. To Be Published

Release Date

2024-10-16

Peptides

HLA class I histocompatibility antigen, alpha chain E: A
Beta-2-microglobulin: B
T cell receptor alpha variable 12-2,T cell receptor alpha chain MC.7.G5: C
T cell receptor beta variable 6-5,T cell receptor beta chain MC.7.G5: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

HLA class I histocompatibility antigen, alpha chain E

Beta-2-microglobulin

T cell receptor alpha variable 12-2,T cell receptor alpha chain MC.7.G5

T cell receptor beta variable 6-5,T cell receptor beta chain MC.7.G5

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