SMTL ID : 8sai.1

Cryo-EM structure of GPR34-Gi complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x S12: O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine(Non-covalent)

S12.1: 16 residues within 4Å: Chain A: T.225, Y.228, M.229, I.233, I.236, L.274, A.275, M.282, R.301, F.312, N.313, L.316, R.379, Y.382, Q.386, N.402 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.225, A:Y.228, A:M.229, A:I.233, A:I.236, A:L.274, A:A.275, A:F.312 Hydrogen bonds: A:Y.228, A:Q.386, A:N.402 Salt bridges: A:K.221, A:R.301, A:R.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, A. et al., Cryo-EM structures of human GPR34 enable the identification of selective antagonists. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-10-04

Peptides

Probable G-protein coupled receptor 34: A
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
S

Membrane

We predict this structure to be a membrane protein.
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Probable G-protein coupled receptor 34

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFv16

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