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SMTL ID : 7t9n.1

M22 Agonist Autoantibody bound to Human Thyrotropin receptor in complex with miniGs399 (composite structure)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x Z41: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate(Non-covalent)

Z41.1:

28 residues within 4Å:

Chain D: E.342, F.343, V.440, S.443, E.444, L.508, P.509, M.510, T.512, E.513, I.521, V.524, L.525, N.528, I.578, Y.581, A.582, A.585, I.586, N.588, P.590, I.592, T.593, V.594, S.597, L.600, L.601, Y.605

15 PLIP interactions:

15 interactions with chain D

Hydrophobic interactions: D:E.342, D:F.343, D:L.508, D:L.508, D:M.510, D:I.521, D:V.524, D:A.582, D:A.585, D:P.590, D:I.592, D:V.594, D:L.600, D:Y.605
Hydrogen bonds: D:T.512

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:	7 residues within 4Å: Chain D: V.157, N.158, Q.161, Y.183, N.186, G.187, Y.213 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.183 Hydrogen bonds: D:N.158, D:Q.161, D:N.186, D:Y.213, D:Y.213
NAG.3:	4 residues within 4Å: Chain D: T.138, N.165, E.166, K.189 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.166, D:K.189
NAG.4:	6 residues within 4Å: Chain D: P.40, S.41, Q.43, P.64, N.65, K.90 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.41, D:S.41

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Faust, B. et al., Autoantibody mimicry of hormone action at the thyrotropin receptor. Nature (2022)

Release Date

2022-08-03

Peptides

M22 Fab light chain: A
M22 Fab heavy chain: B
Nanobody 35: C
Thyrotropin receptor: D
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: E
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: F
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
N

D
R

E
X

F
Y

G
Z

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

M22 Fab light chain

M22 Fab heavy chain

Nanobody 35

Thyrotropin receptor

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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