- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-mer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 17 x CLR: CHOLESTEROL(Non-covalent)(Non-functional Binders)
CLR.5: 8 residues within 4Å:- Chain F: Y.535, D.549, T.550, A.553, K.554, A.557, V.558, F.561
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:A.553, F:K.554, F:A.557, F:V.558, F:F.561
CLR.6: 15 residues within 4Å:- Chain F: E.436, V.439, Y.440, T.443, V.444, L.447, I.471, C.479, L.482, V.516, L.519, N.520, V.522, A.523, I.526
13 PLIP interactions:13 interactions with chain F- Hydrophobic interactions: F:E.436, F:E.436, F:V.439, F:Y.440, F:Y.440, F:Y.440, F:T.443, F:V.444, F:I.471, F:L.519, F:L.519, F:V.522, F:A.523
CLR.7: 10 residues within 4Å:- Chain F: G.421, P.422, N.425, T.426, F.429, F.480, L.487
- Ligands: CLR.8, CLR.18, CLR.19
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:P.422, F:F.429, F:L.487, F:L.487
CLR.8: 7 residues within 4Å:- Chain F: F.480, L.484, L.487, V.488
- Ligands: CLR.7, CLR.19, PLM.22
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:L.484, F:V.488
CLR.9: 15 residues within 4Å:- Chain F: I.521, F.564, M.567, A.568, S.571, F.572, L.575, S.576, L.579, K.581, L.583
- Ligands: CLR.10, CLR.12, CLR.21, PLM.25
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:A.568, F:F.572
CLR.10: 5 residues within 4Å:- Chain F: F.572, L.583
- Ligands: CLR.9, CLR.12, CLR.21
No protein-ligand interaction detected (PLIP)CLR.11: 9 residues within 4Å:- Chain F: P.569, Y.573, I.584, N.588, I.591, L.592, F.596
- Ligands: CLR.12, CLR.13
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:P.569, F:I.591, F:F.596
CLR.12: 9 residues within 4Å:- Chain F: F.564, A.568, P.569, F.572, Y.573, L.583
- Ligands: CLR.9, CLR.10, CLR.11
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:F.564, F:F.572
CLR.13: 8 residues within 4Å:- Chain F: Y.344, F.346, I.565, I.591, L.595, F.596, L.599
- Ligands: CLR.11
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:F.346, F:F.346, F:I.591, F:I.591, F:F.596
CLR.14: 5 residues within 4Å:- Chain F: K.345, F.346, I.349, V.350, F.353
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:F.346, F:I.349, F:V.350, F:F.353
CLR.15: 10 residues within 4Å:- Chain F: R.348, I.349, W.352, F.353, L.356, L.357, L.360, L.405
- Ligands: CLR.16, CLR.20
8 PLIP interactions:8 interactions with chain F- Hydrophobic interactions: F:R.348, F:I.349, F:W.352, F:F.353, F:F.353, F:L.356, F:L.405
- Hydrogen bonds: F:R.348
CLR.16: 8 residues within 4Å:- Chain F: W.352, L.356, L.359, L.360, L.398, L.405
- Ligands: CLR.15, CLR.17
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:L.356
CLR.17: 7 residues within 4Å:- Chain F: W.352, L.398, S.402, L.405, Y.406
- Ligands: CLR.16, PLM.26
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:W.352, F:L.405, F:L.405
CLR.18: 5 residues within 4Å:- Chain F: P.422, T.426, F.430
- Ligands: CLR.7, CLR.19
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:F.430
CLR.19: 3 residues within 4Å:- Ligands: CLR.7, CLR.8, CLR.18
No protein-ligand interaction detected (PLIP)CLR.20: 12 residues within 4Å:- Chain F: L.357, L.360, G.361, F.364, F.606, I.610, F.611, F.615, Q.616, V.619, F.620
- Ligands: CLR.15
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:L.360, F:F.364, F:I.610, F:Q.616, F:F.620
CLR.21: 12 residues within 4Å:- Chain F: I.521, F.524, V.525, C.528, C.529, V.532, K.533, I.536, F.564, M.567
- Ligands: CLR.9, CLR.10
No protein-ligand interaction detected (PLIP)- 5 x PLM: PALMITIC ACID(Non-covalent)
PLM.22: 6 residues within 4Å:- Chain F: F.480, L.481, L.484, V.488
- Ligands: CLR.8, PLM.23
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:L.484
PLM.23: 5 residues within 4Å:- Chain F: L.485, V.488, I.490, L.508
- Ligands: PLM.22
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:L.485, F:V.488
PLM.24: 8 residues within 4Å:- Chain F: P.507, L.508, L.510, A.511, V.514, F.515, T.518
- Ligands: PLM.25
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:P.507, F:L.508, F:A.511, F:V.514
PLM.25: 9 residues within 4Å:- Chain F: L.510, V.514, T.518, L.575, I.578, L.579, N.580
- Ligands: CLR.9, PLM.24
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:V.514, F:L.575, F:L.579
- Hydrogen bonds: F:N.580
PLM.26: 11 residues within 4Å:- Chain F: M.395, L.398, L.399, S.402, V.403, Y.406, H.414, W.418, T.426, F.430
- Ligands: CLR.17
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:V.403, F:Y.406, F:Y.406, F:F.430
- 1 x HOI: ~{N}-[4-[[2-methoxy-5-[(2~{S})-5-oxidanyl-4-oxidanylidene-3-(phenylmethyl)-1,2-dihydroquinazolin-2-yl]phenyl]methoxy]phenyl]ethanamide(Non-covalent)
HOI.27: 27 residues within 4Å:- Chain F: E.334, F.335, T.431, V.432, S.435, E.436, I.498, L.500, P.501, M.502, T.504, I.513, V.516, L.517, I.570, Y.573, A.574, A.577, I.578, P.582, I.584, T.585, V.586, S.589, L.592, L.593, Y.597
14 PLIP interactions:14 interactions with chain F- Hydrophobic interactions: F:E.334, F:V.432, F:L.500, F:P.501, F:M.502, F:I.513, F:V.516, F:I.570, F:A.574, F:A.577, F:I.578, F:I.584
- Hydrogen bonds: F:V.586, F:S.589
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duan, J. et al., Hormone- and antibody-mediated activation of the thyrotropin receptor. Nature (2022)
- Release Date
- 2022-08-17
- Peptides
- Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
M22 antibody light chain: D
Nanobody35: E
Thyrotropin receptor: F
M22 antibody heavy chain: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
GD
LE
NF
RG
Y - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7xw6.1
TSHR-Gs-M22 antibody-ML109 complex
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
M22 antibody light chain
Nanobody35
Thyrotropin receptor
M22 antibody heavy chain
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5he0.1 | 5he3.1 | 5ukm.1 | 6b3j.1 | 6d9h.1 | 6dde.1 | 6ddf.1 | 6e3y.1 | 6k41.1 | 6k42.1 | 6kpf.1 | 6kpg.1 | 6lfm.1 | 6lfo.1 | 6lmk.1 | 6lml.1 | 6m1h.1 | 6m1i.1 | 6n4b.1 | 6nbf.1 | 6nbh.1 | 6nbi.1 | 6ni3.1 | 6niy.1 | 6oij.1 | 6oik.1 | 6orv.1 | 6os9.1 | 6osa.1 | 6ot0.1 more...less...6p9x.1 | 6p9y.1 | 6pb0.1 | 6pb1.1 | 6uun.1 | 6uus.1 | 6uva.1 | 6vcb.1 | 6vn7.1 | 6wha.1 | 6whc.1 | 6wi9.1 | 6wpw.1 | 6wzg.1 | 6xbj.1 | 6xbk.1 | 6xbl.1 | 6xbm.1 | 6xox.1 | 7aue.1 | 7bb6.1 | 7bb7.1 | 7bw0.1 | 7c2e.1 | 7ckw.1 | 7ckx.1 | 7cky.1 | 7ckz.1 | 7cmu.1 | 7cmv.1 | 7crh.1 | 7cx2.1 | 7cx3.1 | 7cx4.1 | 7cz5.1 | 7d68.1 | 7d76.1 | 7d77.1 | 7d7m.1 | 7dty.1 | 7dw9.1 | 7e14.1 | 7e2x.1 | 7e2y.1 | 7e2z.1 | 7e32.1 | 7e33.1 | 7e9g.1 | 7e9h.1 | 7eb2.1 | 7eib.1 | 7ej0.1 | 7ej8.1 | 7eja.1 | 7ejk.1 | 7ejx.1 | 7eo2.1 | 7eo4.1 | 7ept.1 | 7eq1.1 | 7euo.1 | 7evy.1 | 7evz.1 | 7ew0.1 | 7ew1.1 | 7ew2.1 | 7ew3.1 | 7ew4.1 | 7ew7.1 | 7exd.1 | 7ezh.1 | 7ezk.1 | 7ezm.1 | 7f16.1 | 7f1q.1 | 7f1r.1 | 7f1s.1 | 7f2o.1 | 7f4d.1 | 7f4f.1 | 7f4h.1 | 7f4i.1 | 7f53.1 | 7f54.1 | 7f55.1 | 7f58.1 | 7f8v.1 | 7f8w.1 | 7f9y.1 | 7f9z.1 | 7fig.1 | 7fih.1 | 7fii.1 | 7fim.1 | 7fin.1 | 7fiy.1 | 7joz.1 | 7jvr.1 | 7kh0.1 | 7ld3.1 | 7ld4.1 | 7mbx.1 | 7mby.1 | 7mts.1 | 7p00.1 | 7p02.1 | 7piu.1 | 7piv.1 | 7qvm.1 | 7ra3.1 | 7ran.1 | 7rbt.1 | 7rg9.1 | 7rgp.1 | 7s8l.1 | 7s8m.1 | 7s8n.1 | 7s8o.1 | 7s8p.1 | 7sbf.1 | 7scg.1 | 7sf7.1 | 7sf8.1 | 7srr.1 | 7t10.1 | 7t11.1 | 7t2g.1 | 7t2h.1 | 7t6b.1 | 7t8x.1 | 7t90.1 | 7t94.1 | 7t96.1 | 7t9i.1 | 7t9n.1 | 7tmw.1 | 7try.1 | 7ts0.1 | 7tuz.1 | 7tyf.1 | 7tyh.1 | 7tyi.1 | 7tyl.1 | 7tyn.1 | 7tyo.1 | 7tyw.1 | 7tyx.1 | 7tyy.1 | 7tzf.1 | 7u2k.1 | 7u2l.1 | 7um5.1 | 7um6.1 | 7um7.1 | 7utz.1 | 7v35.1 | 7v68.1 | 7v69.1 | 7v6a.1 | 7v9l.1 | 7v9m.1 | 7vfx.1 | 7vie.1 | 7vif.1 | 7vig.1 | 7vih.1 | 7vkt.1 | 7vl8.1 | 7vl9.1 | 7vla.1 | 7vqx.1 | 7vug.1 | 7vuh.1 | 7vui.1 | 7vuj.1 | 7w0l.1 | 7w0m.1 | 7w0n.1 | 7w0o.1 | 7w0p.1 | 7w2z.1 | 7w6p.1 | 7w7e.1 | 7wbj.1 | 7wcm.1 | 7wcn.1 | 7wf7.1 | 7wj5.1 | 7wkd.1 | 7wq3.1 | 7wq4.1 | 7wu2.1 | 7wu3.1 | 7wu4.1 | 7wu5.1 | 7wu9.1 | 7wuj.1 | 7wuq.1 | 7wv9.1 | 7wvu.1 | 7wvv.1 | 7wvw.1 | 7wvx.1 | 7wvy.1 | 7wxu.1 | 7wxw.1 | 7wy0.1 | 7wy5.1 | 7wy8.1 | 7wyb.1 | 7wz4.1 | 7wz7.1 | 7x10.1 | 7x2v.1 | 7x9a.1 | 7x9b.1 | 7x9c.1 | 7x9y.1 | 7xa3.1 | 7xat.1 | 7xau.1 | 7xav.1 | 7xbd.1 | 7xbw.1 | 7xbx.1 | 7xk2.1 | 7xk8.1 | 7xmr.1 | 7xms.1 | 7xmt.1 | 7xou.1 | 7xov.1 | 7xp4.1 | 7xp5.1 | 7xp6.1 | 7xt8.1 | 7xt9.1 | 7xta.1 | 7xtb.1 | 7xtc.1 | 7xv3.1 | 7xw5.1 | 7xz5.1 | 7xz6.1 | 7y12.1 | 7y15.1 | 7y64.1 | 7y65.1 | 7y66.1 | 7y67.1 | 7yj4.1 | 7yk6.1 | 7yk7.1 | 7yon.1 | 7yoo.1 | 7yp7.1 | 7ys6.1 | 8dpf.1 | 8dpg.1 | 8dph.1 | 8dpi.1 | 8dwc.1 | 8dwg.1 | 8dwh.1 | 8e3x.1 | 8e3y.1 | 8e3z.1 | 8e9w.1 | 8e9x.1 | 8e9y.1 | 8e9z.1 | 8f76.1 | 8fmz.1 | 8fn0.1 | 8fn1.1 | 8g59.1 | 8gy7.1 | 8h8j.1 | 8ha0.1 | 8haf.1 | 8hao.1 | 8hbd.1 | 8hcq.1 | 8hcx.1 | 8hdo.1 | 8hdp.1 | 8hsc.1 | 8i2g.1 | 8id3.1 | 8id4.1 | 8id6.1 | 8id8.1 | 8id9.1