SMTL ID : 7xxi.1

Cryo-EM structure of the purinergic receptor P2Y12R in complex with 2MeSADP and Gi

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 6AD: 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate)(Non-covalent)

6AD.1: 16 residues within 4Å: Chain A: R.95, C.99, S.103, V.104, Y.107, F.108, Y.111, N.161, C.177, K.181, H.189, N.193, R.258, Y.261, Q.265, K.282 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:C.99, A:S.103, A:Y.111, A:N.161, A:C.177, A:K.181, A:K.181, A:H.189, A:N.193, A:Y.261, A:Q.265, A:Q.265 Salt bridges: A:R.95, A:H.189, A:R.258, A:K.282, A:K.282 pi-Stacking: A:Y.107, A:Y.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B. et al., Structural insights into signal transduction of the purinergic receptors P2Y1R and P2Y12R. Protein Cell (2023)

Release Date

2023-06-07

Peptides

P2Y purinoceptor 12: A
Guanine nucleotide-binding protein G(i) subunit alpha-2: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

Membrane

We predict this structure to be a membrane protein.
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P2Y purinoceptor 12

Guanine nucleotide-binding protein G(i) subunit alpha-2

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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