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SMTL ID : 7d76.1

Cryo-EM structure of the beclomethasone-bound adhesion receptor GPR97-Go complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

3 x PLM: PALMITIC ACID(Covalent)(Non-covalent)

PLM.1:	12 residues within 4Å: Chain A: C.223 Chain D: M.368, A.372, H.374, L.375, F.451, T.454, F.455, L.491, S.495, G.499, W.532 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:A.372, D:L.375, D:F.451, D:T.454, D:F.455, D:L.491, D:W.532 Hydrogen bonds: D:H.374
PLM.3:	10 residues within 4Å: Chain D: I.299, Y.302, R.306, V.322, A.323, G.326, F.329, L.333, F.391 Ligands: CLR.7 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.299, D:V.322, D:A.323, D:F.329, D:L.333, D:F.391 Salt bridges: D:R.306
PLM.4:	5 residues within 4Å: Chain D: G.369, L.370, F.387, K.393, L.394 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.387, D:K.393

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2:

11 residues within 4Å:

Chain D: L.401, L.404, M.405, G.408, T.409, A.412, T.439, Y.441, A.442, I.445, T.446

4 PLIP interactions:

4 interactions with chain D

Hydrophobic interactions: D:L.401, D:I.445, D:T.446
Hydrogen bonds: D:Y.441

1 x GXR: (8~{S},9~{R},10~{S},11~{S},13~{S},14~{S},16~{S},17~{R})-9-chloranyl-10,13,16-trimethyl-11,17-bis(oxidanyl)-17-(2-oxidanylethanoyl)-6,7,8,11,12,14,15,16-octahydrocyclopenta[a]phenanthren-3-one(Non-covalent)

GXR.5:

8 residues within 4Å:

Chain D: F.335, F.357, W.433, A.505, I.506, L.510, F.518, N.522

3 PLIP interactions:

3 interactions with chain D

Hydrophobic interactions: D:F.335, D:F.518
Hydrogen bonds: D:Y.418

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.6:	5 residues within 4Å: Chain D: L.392, S.395, L.396, W.399 Ligands: CLR.7 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.392, D:L.396, D:W.399
CLR.7:	6 residues within 4Å: Chain D: Y.359, F.360, W.399, V.406 Ligands: PLM.3, CLR.6 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.359, D:F.360, D:W.399, D:V.406

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ping, Y.Q. et al., Structures of the glucocorticoid-bound adhesion receptor GPR97-G o complex. Nature (2021)

Release Date

2021-02-03

Peptides

Guanine nucleotide-binding protein G(o) subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Adhesion G protein-coupled receptor G3; GPR97: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
R

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(o) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Adhesion G protein-coupled receptor G3; GPR97

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Cartoon
Tube
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Hyperball
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Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

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