SMTL ID : 9c5u.1

Cryo EM structure of DCAF2:Compound 1 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 1'-acetyl-1',4'-dihydro-3'H-spiro[cyclopentane-1,2'-quinoxalin]-3'-one

01.1: 6 residues within 4Å: Chain A: Q.140, C.141, R.161, D.214, F.215, Q.216 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.161, A:F.215 Hydrogen bonds: A:D.214, A:Q.216, A:Q.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMahon, E.J. et al., Structural Basis for DCAF2 as a Novel E3 Ligase for PROTAC-Mediated Targeted Protein Degradation. Structure (2025)

Release Date

2025-10-01

Peptides

Denticleless protein homolog: A
DNA damage-binding protein 1: B
DET1- and DDB1-associated protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Denticleless protein homolog

DNA damage-binding protein 1

DET1- and DDB1-associated protein 1

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