SMTL ID : 9c5v.1

Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.36 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 01: N-({4-[(4-{[1'-(chloroacetyl)-3'-oxo-3',4'-dihydro-1'H-spiro[cyclopentane-1,2'-quinoxalin]-6'-yl]oxy}piperidin-1-yl)methyl]phenyl}methyl)-2-[(6S,10P)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetamide

01.1: 12 residues within 4Å: Chain A: C.141, R.161, V.213 Chain C: W.40, P.41, F.42, V.46, K.50, L.51, Y.56, I.105, M.108 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:P.41, C:F.42, C:V.46, C:L.51, C:I.105, A:V.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMahon, E.J. et al., Structural Basis for DCAF2 as a Novel E3 Ligase for PROTAC-Mediated Targeted Protein Degradation. Structure (2025)

Release Date

2025-10-01

Peptides

Denticleless protein homolog: A
DNA damage-binding protein 1: B
Bromodomain-containing protein 4: C
DET1- and DDB1-associated protein 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Denticleless protein homolog

DNA damage-binding protein 1

Bromodomain-containing protein 4

DET1- and DDB1-associated protein 1

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