SMTL ID : 9h59.1

Cryo-EM structure of DDB1-CRBN in complex with NK7-902 and NEK7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 2-[(3S)-2,6-bis(oxidanylidene)piperidin-3-yl]-5-[(1S,2R,5S)-2-(ethylamino)-8-azabicyclo[3.2.1]octan-8-yl]isoindole-1,3-dione

01.1: 15 residues within 4Å: Chain B: A.54, C.55, L.56, L.57, D.58, G.59 Chain C: N.368, H.374, E.394, H.395, S.396, W.397, W.403, W.417, F.419 11 PLIP interactions: 1 interactions with chain B, 10 interactions with chain C Hydrophobic interactions: B:L.56, C:W.397, C:W.403, C:W.403, C:W.417, C:F.419 Hydrogen bonds: C:N.368, C:H.395, C:H.395, C:H.395, C:W.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khoshouei, M. et al., Cryo-EM structure of DDB1-CRBN in complex with NK7-902 and NEK7. To Be Published

Release Date

2025-06-25

Peptides

DNA damage-binding protein 1: A
Serine/threonine-protein kinase Nek7: B
Protein cereblon: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

DNA damage-binding protein 1

Serine/threonine-protein kinase Nek7

Protein cereblon

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