SMTL ID : 9l3t.1

PPARgamma Ligand binding domain in complex with piperine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

1 x AYR: (2E,4E)-5-(2H-1,3-benzodioxol-5-yl)-1-(piperidin-1-yl)penta-2,4-dien-1-one(Non-covalent)

AYR.1: 21 residues within 4Å: Chain A: I.48, L.54, G.57, E.58, I.61, K.62, R.79, I.80, G.83, C.84, R.87, L.129, L.132, V.138, L.139, I.140, S.141, M.147, L.152, F.162, M.163 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.61, A:I.140 Hydrogen bonds: A:E.58 Water bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egawa, D. et al., Molecular interactions between piperine and peroxisome proliferator-activated receptor gamma ligand-binding domain revealed using co-crystallization studies. Acta Crystallogr.,Sect.F (2025)

Release Date

2025-04-16

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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