SMTL ID : 9n9r.1

Model of APC/C-CDC20-UBE2C from H2A/H2B-bound complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-1-1-1-2-1-1-2-2-1-1-1-1-1-1-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)

ZN.1: 2 residues within 4Å: Chain B: I.60, C.73 No protein-ligand interaction detected (PLIP) ZN.2: 3 residues within 4Å: Chain B: M.57, H.58, L.61 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:M.57 ZN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.4: 3 residues within 4Å: Chain K: E.104, L.176, G.223 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skrajna, A. et al., APC/C-mediated ubiquitylation of extranucleosomal histone complexes lacking canonical degrons. Nat Commun (2025)

Release Date

2025-04-16

Peptides

Anaphase-promoting complex subunit 1: A
Anaphase-promoting complex subunit 11: B
Anaphase-promoting complex subunit 15: C
Anaphase-promoting complex subunit CDC26: DS
Anaphase-promoting complex subunit 16: E
Anaphase-promoting complex subunit 4: F
Cell division cycle protein 27 homolog: GM
Cell division cycle protein 16 homolog: HP
Anaphase-promoting complex subunit 10: I
Anaphase-promoting complex subunit 13: J
Anaphase-promoting complex subunit 2: K
Anaphase-promoting complex subunit 5: L
Ubiquitin-conjugating enzyme E2 C: N
Cell division cycle protein 20 homolog: O
Cell division cycle protein 23 homolog: QR
Anaphase-promoting complex subunit 7: TU

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
G

S
W

E
H

F
I

G
J

M
P

H
K

P
S

I
L

J
M

K
N

L
O

N
Q

O
R

Q
U

R
V

T
Y

U
Z

Anaphase-promoting complex subunit 1

Anaphase-promoting complex subunit 11

Anaphase-promoting complex subunit 15

Anaphase-promoting complex subunit CDC26

Anaphase-promoting complex subunit 16

Anaphase-promoting complex subunit 4

Cell division cycle protein 27 homolog

Cell division cycle protein 16 homolog

Anaphase-promoting complex subunit 10

Anaphase-promoting complex subunit 13

Anaphase-promoting complex subunit 2

Anaphase-promoting complex subunit 5

Ubiquitin-conjugating enzyme E2 C

Cell division cycle protein 20 homolog

Cell division cycle protein 23 homolog

Anaphase-promoting complex subunit 7

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