P0DTC1 (R1A_SARS2) Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

4405 aa; Sequence (Fasta) ; 2 identical sequences: Severe acute respiratory syndrome coronavirus 2: A0A6G6A224, A0A6G7KRG6

Available Structures

Host translation inhibitor nsp1 1-180; PRO_0000449635

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7k7p.1.Amonomer0.8110-126
100.00
Assess
6zoj.1.8monomer0.67148-180
100.00
Assess

Non-structural protein 2 181-818; PRO_0000449636

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7msw.1.Amonomer0.84184-818
ZN;100.00
Assess

Papain-like protease nsp3 819-2763; PRO_0000449637

DescriptionPDB IDOligo-stateRangeLigands
The crystal structure of Papain-Like Protease of SARS CoV-2, C111S/D286N mutant, in complex with a … Heteromer
P0CG47; P0CG48;
1567-1878
ZN;EDO;
Assess
Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutantmonomer1563-1878
ZN;PO4;
Assess
Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 3, 4-Dihydroxybenzoic acid, meth…monomer1564-1878
HE9;GOL;ZN;PO4;CL;
Assess
Structure of SARS-CoV-2 Papain-like Protease bound to N-(2-pyrrolidyl)-3,4,5-trihydroxybenzoylhydra…monomer1564-1878
DZI;GOL;ZN;CL;PO4;
Assess
Structure of SARS-CoV-2 Papain-like Protease bound to N-(3,4-dihydroxybenzylidene)-thiosemicarbazonemonomer1564-1878
A6Q;GOL;ZN;PO4;CL;
Assess
Structure of SARS-CoV-2 Papain-like Protease bound to N-(3-methoxy-4-hydroxy-acetophenone)thiosemic…monomer1564-1878
A3X;GOL;ZN;CL;PO4;
Assess
Structure of SARS-CoV-2 Papain-like Protease bound to N-(2,4-dihydroxybenzylidene)-thiosemicarbazonemonomer1564-1878
GOL;A4O;ZN;PO4;CL;
Assess
Structure of SARS-CoV-2 Papain-like Protease bound to N-(3,5-dimethoxy-4-hydroxybenzyliden)thiosemi…monomer1564-1878
A5I;GOL;ZN;PO4;CL;
Assess
Structure of SARS-CoV-2 Papain-like Protease bound to N-(2,5-dihydroxybenzylidene)-thiosemicarbazonemonomer1564-1878
A7L;GOL;ZN;PO4;CL;
Assess
SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-89monomer1564-1878
ZN;SO4;XT7;GOL;
Assess
SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-83monomer1564-1878
ZN;SO4;BO3;Y54;
Assess
SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-24monomer1564-1878
XR8;ZN;SO4;BO3;
Assess
SARS CoV-2 PLpro in complex with inhibitor 3kmonomer1566-1875
S88;ZN;DMS;
Assess
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6ywk.3.Amonomer0.841025-1194
100.00
Assess
6w9c.1.Amonomer0.801566-1878
ZN;100.00
Assess
3e9s.1.Amonomer0.801564-1877
TTT;ZN;82.86
Assess
7cmd.4.Amonomer0.791564-1878
TTT;ZN;100.00
Assess
2w2g.1.Amonomer0.791231-1494
75.00
Assess
6wuu.2.Amonomer0.791562-1879
ACE;ZN;99.69
Assess
2kqv.1.Amonomer0.761369-1493
78.13
Assess
2kqw.1.Amonomer0.711496-1550
80.22
Assess
2k87.1.Amonomer0.691907-2021
81.74
Assess

Non-structural protein 4 2764-3263; PRO_0000449638

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
3vcb.1.Ahomo-2-mer0.723174-3262
61.36
Assess

3C-like proteinase nsp5 3264-3569; PRO_0000449639

DescriptionPDB IDOligo-stateRangeLigands
the complex of SARS-CoV2 3CL and NB1A2 Heteromer
3264-3563
SO4;
Assess
the complex of SARS-CoV2 3cl and NB2B4 Heteromer
3275-3566
Assess
CRYSTAL STRUCTURE OF THE SARS-COV-2 MAIN PROTEASE COMPLEXED WITH FRAGMENT F01homo-2-mer3264-3569
NA;DMS;5P9;
Assess
Crystal structure of SARS-CoV-2 3CLpro in complex with the non-covalent inhibitor WU-04homo-2-mer3264-3569
J7R;GOL;
Assess
Structure of the SARS-CoV-2 main protease in complex with halicinhomo-2-mer3264-3569
U88;
Assess
Crystal structure of SARS-CoV-2 3CLpro in complex with the non-covalent inhibitor WU-02homo-2-mer3264-3569
J7O;
Assess
Discovery of SARS-CoV-2 3CLpro peptidomimetic inhibitors through H41-specific protein-ligand intera…homo-2-mer3264-3569
3XI;
Assess
Structure of the SARS-COV-2 main protease with 337 inhibitorhomo-2-mer3264-3568
G7L;
Assess
Structure of the SARS-COV-2 main protease with EN102 inhibitorhomo-2-mer3264-3568
G7O;
Assess
Crystal structure of SARS-Cov-2 main protease in complex with PF07321332 in spacegroup P1211homo-2-mer3265-3567
4WI;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor NK01-63homo-2-mer3264-3566
N63;NA;EDO;SCN;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor NK01-14homo-2-mer3264-3566
XTP;SCN;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB54homo-2-mer3264-3566
I54;PO4;
Assess
SARS-CoV-2 3CLprohomo-2-mer3264-3566
5IZ;
Assess
SARS-CoV-2 3CLprohomo-2-mer3264-3566
59S;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor NK01-48homo-2-mer3264-3565
Y48;PO4;EDO;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB56homo-2-mer3264-3565
Q56;MG;
Assess
SARS-CoV-2 3CL protease (3CLpro) in complex with compound 3whomo-2-mer3264-3565
9FF;
Assess
SARS-CoV-2 3CL protease (3CLpro) in complex with compound 3afhomo-2-mer3264-3564
QNC;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB46homo-2-mer3264-3564
V46;PO4;MG;
Assess
The crystal structure of SARS-CoV-2 3CL protease in complex with compound 1homo-2-mer3264-3564
7XB;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor EB48homo-2-mer3264-3564
W48;MG;
Assess
The crystal structure of SARS-CoV-2 3C-like protease in complex with a traditional Chinese Medicine…homo-2-mer3264-3564
ODN;
Assess
Crystal structure of SARS-CoV-2 3CL in complex with inhibitor SL-4-241homo-2-mer3264-3564
S4L;ACT;
Assess
Crystal structure of SARS-Cov-2 main protease in complex with PF07321332 in spacegroup P212121homo-2-mer3266-3565
4WI;
Assess
crystal structure of SARS-CoV-2 3CL proteasehomo-2-mer3264-3563
Assess
The crystal structure of SARS-CoV-2 3CL protease in complex with compound 3homo-2-mer3266-3564
7YY;
Assess
A dual Inhibitor Against Main Proteasemonomer3264-3568
5IL;
Assess
SARS-COV2 Main Protease in complex with inhibitor MG-131monomer3264-3567
I8H;NA;
Assess
SARS-COV2 Main Protease in complex with inhibitor MG78monomer3264-3564
I70;CL;NA;
Assess
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5rfv.1.Bhomo-2-mer0.913264-3567
T8J;100.00
Assess
5r7z.1.Bhomo-2-mer0.903264-3567
HWH;100.00
Assess
6lu7.1.Bhomo-2-mer0.893264-3569
100.00
Assess
2z9j.1.Ahomo-2-mer0.893264-3567
DTZ;96.08
Assess
6y2g.1.Ahomo-2-mer0.883264-3566
GLY;O6K;100.00
Assess
2a5i.1.Bhomo-2-mer0.873264-3569
AZP;96.08
Assess

Non-structural protein 7 3860-3942; PRO_0000449641

DescriptionPDB IDOligo-stateRangeLigands
Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mecha… Heteromer
P0DTD1;
3861-3932
13×ZN;MG;
Assess
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7jlt.1.Amonomer0.803860-3938
100.00
Assess
6m71.1.Bmonomer0.803861-3930
100.00
Assess
2ahm.1.Bmonomer0.753860-3933
98.80
Assess

Non-structural protein 8 3943-4140; PRO_0000449642

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7jlt.1.Dmonomer0.764019-4135
100.00
Assess
2ahm.1.Hmonomer0.763944-4134
97.47
Assess
6nur.1.Bmonomer0.754019-4133
97.47
Assess
2ahm.1.Emonomer0.693980-4134
97.47
Assess
6m71.1.Dmonomer0.694020-4133
100.00
Assess

Non-structural protein 9 4141-4253; PRO_0000449643

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6w4b.1.Ahomo-2-mer0.804141-4253
100.00
Assess
1qz8.1.Ahomo-2-mer0.804143-4253
97.35
Assess
1uw7.1.Bhomo-2-mer0.754141-4253
97.35
Assess

Non-structural protein 10 4254-4392; PRO_0000449644

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
2g9t.1.Ahomo-12-mer0.794261-4382
24×ZN;97.12
Assess
6w4h.1.Bmonomer0.764271-4386
ZN;100.00
Assess