P0DTC1 (R1A_SARS2) Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Replicase polyprotein 1a UniProtKBInterProInteractive Modelling
4405 aa; Sequence (Fasta) ;
2 identical sequences: Severe acute respiratory syndrome coronavirus 2: A0A6G7KRG6, A0A6G6A224
It is possible new templates exist for this target since these models were created.
Available Structures
Host translation inhibitor nsp1 1-180; PRO_0000449635
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7k7p.1.A | monomer | 0.76 | 100.00 | |||
| 6zoj.1.8 | monomer | 0.67 | 100.00 | |||
Non-structural protein 2 181-818; PRO_0000449636
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7msw.1.A | monomer | 0.84 | 3×ZN; | 100.00 | ||
Papain-like protease nsp3 819-2763; PRO_0000449637
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an… |
Heteromer P62987; | 100 | 1×ZN; 2×BR; | |||
| Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutant | homo-2-mer | 99.68 | 2×ZN; 2×PO4; | |||
| Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 3, 4-Dihydroxybenzoic acid, meth… | homo-2-mer | 100 | 2×HE9; 4×GOL; 2×ZN; 8×PO4; 2×CL; | |||
| Structure of SARS-CoV-2 NSP3 macrodomain in the apo form | homo-2-mer | 100 | 2×CL; 2×MPO; | |||
| SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 7 | monomer | 99.37 | 1×A1ARL; 1×ZN; | |||
| SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 10 | monomer | 99.68 | 1×A1ASL; 1×ZN; 1×SO4; | |||
| SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-89 | monomer | 100 | 1×ZN; 2×SO4; 1×XT7; 1×GOL; | |||
| SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-83 | monomer | 100 | 1×ZN; 4×SO4; 2×BO3; 1×Y54; | |||
| SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-24 | monomer | 100 | 1×XR8; 1×ZN; 2×SO4; 3×BO3; | |||
| SARS-CoV-2 papain-like protease (PLpro) bound to PF-07957472 | monomer | 99.68 | 1×A1AZ1; 1×TFA; 1×ZN; | |||
| SARS CoV-2 PLpro in complex with inhibitor 3k | monomer | 99.67 | 1×S88; 4×ZN; 1×DMS; | |||
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6ywk.3.A | monomer | 0.84 | 100.00 | |||
| 6w9c.1.A | monomer | 0.80 | 1×ZN; | 100.00 | ||
| 3e9s.1.A | monomer | 0.79 | 1×TTT; 1×ZN; | 82.86 | ||
| 7cmd.4.A | monomer | 0.79 | 1×TTT; 1×ZN; | 100.00 | ||
| 2w2g.1.A | monomer | 0.79 | 75.00 | |||
| 6wuu.2.A | monomer | 0.79 | 1×ACE; 1×ZN; | 99.69 | ||
| 2kqv.1.A | monomer | 0.75 | 78.13 | |||
| 2kqw.1.A | monomer | 0.71 | 80.22 | |||
| 2k87.1.A | monomer | 0.69 | 81.74 | |||
Non-structural protein 4 2764-3263; PRO_0000449638
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 3vcb.1.A | homo-2-mer | 0.72 | 61.36 | |||
3C-like proteinase nsp5 3264-3569; PRO_0000449639
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| CRYSTAL STRUCTURE OF THE SARS-COV-2 MAIN PROTEASE COMPLEXED WITH FRAGMENT F01 | homo-2-mer | 100 | 4×NA; 4×DMS; 2×5P9; | |||
| Crystal structure of SARS-CoV-2 Mpro in complex with cyclic peptide GM4 including unnatural amino a… | homo-2-mer | 100 | 2×PEG; 1×DMS; 2×EDO; 1×PGE; | |||
| SARS-CoV-2 Mpro (Omicron, P132H+T169S) in complex with alpha-ketoamide 13b-K | homo-2-mer | 99.35 | 2×O6K; | |||
| SARS-CoV-2 Main protease bound to a non-covalent non-peptidic HTS hit | homo-2-mer | 100 | 4×DMS; 3×EDO; 1×SO4; 2×A1A21; 2×A1AFD; 1×GOL; | |||
| SARS-CoV-2 Mpro (Omicron, P132H+T169S) free enzyme | homo-2-mer | 99.35 | ||||
| Crystal structure of SARS-CoV-2 Mpro with compound 12 | homo-2-mer | 100 | 2×A1IL7; 7×SO4; 5×GOL; 2×EDO; | |||
| Structure of SARS-CoV-2 Mpro in complex with its degrader | homo-2-mer | 100 | 2×A1LYZ; | |||
| Crystal Structure of SARS-CoV-2 Main Protease (Mpro) L50F/E166A/L167F Triple Mutant | homo-2-mer | 99.02 | ||||
| Crystal structure of SARS-CoV-2 Main Protease (Mpro) with covalent inhibitor 5,8-Dihydroxy-1,4-naph… | homo-2-mer | 100.0 | 2×PEG; 1×X7F; 1×DMS; | |||
| Crystal structure of SARS-CoV-2 Mpro-Q189K mutant in complex with nirmatrelvir | homo-2-mer | 99.67 | 2×4WI; | |||
| Crystal structure of SARS-CoV-2 Mpro-E166V mutant, free enzyme | homo-2-mer | 99.67 | ||||
| SARS-CoV-2 Mpro (Omicron,P132H) in complex with alpha-ketoamide 13b-K at pH 8.5 | homo-2-mer | 99.67 | 2×O6K; 1×CL; | |||
| The co-crystal structure of SARS-CoV-2 Mpro in complex with compound H109 | homo-2-mer | 100 | 2×A1D9H; | |||
| SARS-COV2 Main Protease in complex with inhibitor MG-131 | homo-2-mer | 100 | 2×I8H; 2×NA; | |||
| SARS-CoV-2 Mpro in Complex with RK-107 | homo-2-mer | 100 | 2×A1IMU; | |||
| Crystal structure of SARS-CoV-2 Mpro with compound 5 | homo-2-mer | 100 | 2×A1IL0; | |||
| Crystal structure of SARS-CoV-2 Mpro-Q189K mutant in complex with 13b-K | homo-2-mer | 99.67 | 2×O6K; | |||
| Crystal structure of the SARS-CoV-2 main protease in complex with SY110 | homo-2-mer | 99.67 | 2×LVX; | |||
| Crystal structure of SARS-CoV-2 Mpro-H172Y mutant, free enzyme | homo-2-mer | 99.01 | 2×CL; | |||
| Crystal structure of SARS-CoV-2 Mpro-H172Y mutant in complex with 13b-K | homo-2-mer | 99.67 | 2×O6K; 1×CL; | |||
| Crystal structure of SARS-CoV-2 Mpro-E166V mutant in complex with 13b-K | homo-2-mer | 99.67 | 2×UAX; | |||
| Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalently bound inhibitor… | homo-2-mer | 100 | 2×A1IF1; 2×BR; | |||
| SARS-COV2 Main Protease in complex with inhibitor MG78 | homo-2-mer | 100 | 2×I70; 2×CL; 4×NA; | |||
| Crystal structure of the SARS-CoV-2 main protease in complex with Hit-1 | homo-2-mer | 100.0 | 2×LV0; 4×DMS; | |||
| Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalently bound inhibitor… | homo-2-mer | 100.0 | 2×A1IEY; 2×MG; 2×BR; | |||
| Crystal structure of SARS-Cov-2 main protease, pH=6.5 | homo-2-mer | 100 | ||||
| Crystal structure of SARS-Cov-2 main protease in complex with S217622 | homo-2-mer | 100 | 2×7YY; | |||
| Crystal structure of SARS-Cov-2 main protease D48N mutant in complex with PF07321332 | homo-2-mer | 99.66 | 2×4WI; | |||
| Crystal structure of SARS-Cov-2 main protease, pH=6.0 | homo-2-mer | 100.0 | ||||
| Crystal structure of SARS-Cov-2 main protease, pH=8.5 | homo-2-mer | 100.0 | ||||
| Crystal structure of SARS-Cov-2 main protease D48N mutant in complex with shikonin | homo-2-mer | 99.32 | 1×FNO; | |||
| Crystal structure of SARS-Cov-2 main protease D48N mutant | homo-2-mer | 99.66 | ||||
| Crystal structure of SARS-CoV-2 Mpro-Q189K mutant, free enzyme | monomer | 99.67 | ||||
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 5rfv.1.B | homo-2-mer | 0.91 | 2×T8J; | 100.00 | ||
| 5r7z.1.B | homo-2-mer | 0.91 | 2×HWH; | 100.00 | ||
| 2z9j.1.A | homo-2-mer | 0.89 | 2×DTZ; | 96.08 | ||
| 6lu7.1.B | homo-2-mer | 0.89 | 100.00 | |||
| 6y2g.1.A | homo-2-mer | 0.88 | 1×GLY; 2×O6K; | 100.00 | ||
| 2a5i.1.B | homo-2-mer | 0.87 | 2×AZP; | 96.08 | ||
Non-structural protein 7 3860-3942; PRO_0000449641
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| SARS-CoV-2 E-RTC complex with RNA-nsp9 |
Heteromer P0DTD1; | 100 | 8×ZN; 2×MN; | |||
| Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mecha… |
Heteromer P0DTD1; | 100 | 13×ZN; 1×MG; | |||
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6m71.1.B | monomer | 0.80 | 100.00 | |||
| 7jlt.1.A | monomer | 0.79 | 100.00 | |||
| 2ahm.1.B | monomer | 0.75 | 98.80 | |||
Non-structural protein 8 3943-4140; PRO_0000449642
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 2ahm.1.H | monomer | 0.77 | 97.47 | |||
| 7jlt.1.D | monomer | 0.76 | 100.00 | |||
| 6nur.1.B | monomer | 0.76 | 97.47 | |||
| 2ahm.1.E | monomer | 0.70 | 97.47 | |||
| 6m71.1.D | monomer | 0.70 | 100.00 | |||
RNA-capping enzyme subunit nsp9 4141-4253; PRO_0000449643
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 1qz8.1.A | homo-2-mer | 0.79 | 97.35 | |||
| 6w4b.1.A | homo-2-mer | 0.79 | 100.00 | |||
| 1uw7.1.B | homo-2-mer | 0.73 | 97.35 | |||
Non-structural protein 10 4254-4392; PRO_0000449644
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 2g9t.1.A | homo-12-mer | 0.80 | 24×ZN; | 97.12 | ||
| 6w4h.1.B | monomer | 0.77 | 2×ZN; | 100.00 | ||