Q9BQA1 | SWISS-MODEL Repository

Q9BQA1 (MEP50_HUMAN) Homo sapiens (Human)

Methylosome protein WDR77 UniProtKB InterPro STRING Interactive Modelling

342 aa; Sequence (Fasta) ; (Isoform 2); 1 identical sequence: Homo sapiens: A0A024R0H7

Available Structures

64 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of PRMT5:MEP50 with EPZ015866 and sinefungin	5c9z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	16-328	100	1×SFG; 1×4Z2; 1×GOL;
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Crystal structure of PRMT5:MEP50 with Compound 15 and sinefungin	5emm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	16-328	100	4×SFG; 4×5QL; 8×GOL;
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Crystal structure of PRMT5:MEP50 with Compound 9 and sinefungin	5emk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	16-328	100	4×SFG; 4×5QH; 8×GOL;
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PRMT5/MEP50 crystal structure with MTA and a phthalazinone inhibitor bound (compound (M)-31)	7s1r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-329	100.0	1×MTA; 1×85E;
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PRMT5/MEP50 with compound 30 bound	7ser PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-329	100.0	1×97L; 1×MTA;
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PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 34	7kic PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	18-328	100	6×EDO; 1×WFS;
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PRMT5-MEP50 Complexed with SAM	7l1g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	18-328	100	15×EDO; 2×CL; 1×SAM;
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PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 72	7kid PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	18-328	100	4×EDO; 1×WFV;
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PRMT5/MEP50 with compound 29 bound	7ses PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-329	100.0	1×97X; 1×MTA;
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PRMT5:MEP50 Complexed with Cyclonucleoside Compound 1	7u30 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	18-328	100	8×EDO; 1×LB3;
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PRMT5/MEP50 crystal structure with MTA and MRTX-1719 bound	7s1s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-329	100.0	1×MTA; 1×85K;
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PRMT5/MEP50 crystal structure with MTA and an achiral, class 1, non-atropisomeric inhibitor bound	7uoh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-329	100.0	1×NXF; 1×MTA;
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CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437	7bo7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-329	100.0	1×U6K; 1×EPE; 3×EDO; 1×PEG;
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HUMAN PRMT5:MEP50 Crystal Structure With MTA and Fragment Bound	7zvu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	2×MTA; 2×UNL; 4×GOL;
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HUMAN PRMT5:MEP50 Crystal Structure With MTA and Fragment Bound	7zuy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 1×UNL; 2×GOL;
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HUMAN PRMT5:MEP50 Crystal Structure With MTA and Fragment Bound	7zv2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 1×UNL; 2×GOL;
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Human PRMT5:MEP50 structure with Fragment (Example 18) and MTA Bound	7zup PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 1×JYX; 2×GOL;
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Crystal structure of PRMT5:MEP50 in complex with MTA	8veo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 10×EDO; 1×GOL; 2×PEG;
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HUMAN PRMT5:MEP50 Crystal Structure With MTA and Fragment Bound	7zuu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 1×UNL; 2×GOL;
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Crystal structure of PRMT5:MEP50 with EPZ015666 and sinefungin	4x60 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×SFG; 1×3XV; 3×GOL;
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HUMAN PRMT5:MEP50 Crystal Structure With MTA and Fragment Bound	7zvl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 1×UNL; 2×GOL; 1×CL;
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Crystal structure of PRMT5:MEP50 with Compound 10 and SAM	5eml PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	4×SAM; 4×5QK; 8×GOL;
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HUMAN PRMT5:MEP50 Crystal Structure With MTA and Fragment Bound	7zuq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 2×GOL; 1×UNL;
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PRMT5:MEP50 complexed with inhibitor PF-06939999	7mx7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	20-329	100.0	4×ZR1;
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PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 4	7kib PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×WFM; 10×EDO; 3×CL; 2×PEG;
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PRMT5:MEP50 Complexed with Allosteric Inhibitor Compound 8	6uxy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×QKY; 1×EDO; 1×GOL;
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Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 1	8vet PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×MTA; 1×A1AAS; 1×EDO; 1×CL;
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HUMAN PRMT5:MEP50 COMPLEX WITH MTA and Fragment 5 Bound	7uy1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	20-329	100.0	1×PJ0; 1×MTA; 1×SO4; 2×EDO; 3×PEG; 2×CL;
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PRMT5:MEP50 Complexed with Allosteric Inhibitor Compound 1a	6uxx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	19-328	100	1×QL1;
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PRMT5:MEP50 complexed with inhibitor PF-06855800	7mxa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	20-329	100.0	4×ZR4;
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Crystal Structure of the human PRMT5:MEP50 Complex	4gqb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744; P62805;	21-329	100.0	4×0XU;
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Human PRMT5 in complex with AZ compound 12	9eyv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	4×A1H76; 4×MTA; 4×SO4;
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Human PRMT5 in complex with AZ compound 28	9eyx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	4×A1H73; 4×MTA; 4×SO4;
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CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJ44064146	6rll PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	1×K8H;
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Human PRMT5 in complex with AZ compound 21	9eyw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	4×A1H8B; 4×MTA; 4×SO4;
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Human PRMT5 in complex with AZ compound 1	9eyu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	4×A1H8A; 4×MTA; 4×SO4;
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CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJ45031882	6rlq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	1×K8N;
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Structure of PRMT5:MEP50 in complex with LLY-283, a potent and selective inhibitor of PRMT5, with a…	6ckc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	4×F5J;
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AMG 193, a clinical stage MTA-cooperative PRMT5 inhibitor, drives anti-tumor activity preclinically…	9c10 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100	2×GOL; 1×DMS; 1×A1ATH; 1×MTA;
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PRMT5 bound to the PBM peptide from pICln	6v0o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744; P54105;	21-329	100	4×SFG; 4×ACE;
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Crystal structure of PRMT5:MEP50 with EPZ015666 and SAH	4x63 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	20-328	100	1×SAH; 1×3XV;
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Cryo-EM structures and computational analysis for enhanced potency in MTA-synergic inhibition of hu…	8cyi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-329	100.0	1×P2R; 1×MTA;
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Crystal Structure of PRMT5:MEP50 in complex with MTA and H4 peptide	5fa5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744; P62805;	21-328	100.0	4×MTA;
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Discovery of Potent and Selective Covalent Protein Arginine Methyltransferase (PRMT5) Inhibitors	6k1s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	21-328	100.0	1×CUX; 1×DMS; 7×EDO;
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Cryo-EM structure of the apo form of human PRMT5:MEP50 complex at a resolution of 3.4 angstrom	6ugh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	23-329	100.0
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PRMT5 bound to PBM peptide from Riok1	6v0n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744; Q9BRS2;	23-328	100.0	4×SFG;
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PRMT5:MEP50 complexed with adenosine	7mxc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	24-329	100.0	4×ADN;
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PRMT5/MEP50 crystal structure with MTA and a phthalazinone inhibitor bound (Compound 9)	7s1q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	23-328	100.0	1×MTA; 1×84W;
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CryoEM structure of PRMT5 bound to covalent PBM-site inhibitor BRD-6988	7m05 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	23-328	100.0	4×YJG;
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Structure of the methylosome-Lsm10/11 complex	8g1u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744; P83369; Q61189;	23-328	100.0	4×ADN;
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Human PRMT5:MEP50 structure with Fragment 3 and MTA Bound	8ctb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	24-328	100.0	1×PWX; 1×MTA;
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Human PRMT5:MEP50 structure with Fragment 4 and MTA Bound	7uyf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	25-329	100.0	1×PUI; 1×MTA; 3×PEG; 3×CL;
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Crystal structure of PRMT5:MEP50 with EPZ015666 and SAM	4x61 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	24-328	100.0	1×SAM; 1×3XV; 1×GOL;
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PRMT5(M420T mutant):MEP50 complexed with inhibitor PF-06939999	7mxn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	26-329	100.0	1×ZR1;
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PRMT5/MEP50 crystal structure with MTA and phthalazinone fragment bound	7s0u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	27-329	100.0	1×CL; 1×NA; 1×EDO; 1×81X; 1×MTA;
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Crystal structure of PRMT5:MEP50 with Compound 8 and sinefungin	5emj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	26-328	100	4×SFG; 4×5QJ; 16×GOL;
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PRMT5(M420T mutant):MEP50 complexed with inhibitor PF-06855800	7mxg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	27-329	100.0	4×ZR4;
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Crystal structure of PRMT5:MEP50 in complex with MTA and TNG908	8vey PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	26-328	100	1×MTA; 1×A1AAV; 4×PEG; 2×EDO; 6×CL;
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Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 23	8veu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	26-328	100	1×MTA; 1×A1AAT; 20×EDO;
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Human PRMT5:MEP50 structure with Fragment 1 and MTA Bound	8csg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	27-329	100.0	1×PWL; 1×MTA; 3×PEG; 2×EDO;
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PRMT5 complex bound to covalent PBM inhibitor BRD6711	6v0p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	27-328	100.0	4×QN4; 8×CL; 4×SFG; 8×GOL;
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PRMT5/MEP50 crystal structure with sinefungin bound	7s1p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	27-328	100.0	1×SFG;
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Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 24	8vew PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	27-328	100	1×MTA; 1×A1AAU; 1×GOL; 2×CL;
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Crystal structure of PRMT5:MEP50 in complex with MTA and oxamide compound 28	8vex PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14744;	28-328	100	1×MTA; 1×A1AAR; 2×CL; 1×GOL;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6ckc.1.H	monomer	0.90	21-329		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

3 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
Isoform 2	6v0o.2.E	monomer	0.79	21-265	88.09
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Isoform 2	2ymu.1.A	monomer	0.62	13-265	19.26
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Isoform 2	2ymu.1.A	monomer	0.61	13-266	18.78
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Q9BQA1 (MEP50_HUMAN) Homo sapiens (Human)

Methylosome protein WDR77 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

64 Experimental Structures

1 SWISS-MODEL model

3 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Methylosome protein WDR77 UniProtKB InterPro STRING Interactive Modelling