SMTL ID : 1dq4.1

A transient unlocked concanavalin A structure with MN2+ bound in the transition metal ion binding site S1 and an empty calcium binding site S2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.8, D.10, H.24, S.34 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:H.24, H2O.1 MN.2: 2 residues within 4Å: Chain A: D.80, D.82 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.80 MN.3: 4 residues within 4Å: Chain B: E.8, D.10, H.24, S.34 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.8, B:D.10, B:H.24 MN.4: 2 residues within 4Å: Chain B: D.80, D.82 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.80 MN.5: 4 residues within 4Å: Chain C: E.8, D.10, H.24, S.34 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.8, C:D.10, C:H.24, H2O.2 MN.6: 2 residues within 4Å: Chain C: D.80, D.82 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.80 MN.7: 4 residues within 4Å: Chain D: E.8, D.10, H.24, S.34 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.8, D:D.10, D:H.24 MN.8: 2 residues within 4Å: Chain D: D.80, D.82 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bouckaert, J. et al., The structural features of concanavalin A governing non-proline peptide isomerization. J.Biol.Chem. (2000)

Release Date

2000-01-19

Peptides

Concanavalin-Br: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Concanavalin-Br

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