SMTL ID : 3biv.1

Human thrombin-in complex with UB-THR11

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: L.46, N.53, T.55 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.46 Hydrogen bonds: B:N.53

1 x 11U: (S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexylamino)ethanoyl)pyrrolidine-2-carboxamide(Non-covalent)

11U.2: 14 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, D.199, A.200, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:V.225 Hydrogen bonds: B:D.199, B:A.200, B:S.226, B:G.228, B:G.230 Water bridges: B:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerlach, C. et al., Thermodynamic Inhibition Profile of a Cyclopentyl and a Cyclohexyl Derivative towards Thrombin: The Same but for Different Reasons. Angew.Chem.Int.Ed.Engl. (2007)

Release Date

2007-12-25

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin

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