SMTL ID : 2v3h.1

Thrombin with 3-cycle no F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-oligomer

Ligands

1 x I25: (2R)-({4-[AMINO(IMINO)METHYL]PHENYL}AMINO){3-[3-(DIMETHYLAMINO)-2,2-DIMETHYLPROPOXY]-5-ETHYLPHENYL}ACETIC ACID(Non-covalent)

I25.1: 15 residues within 4Å: Chain A: H.43, Y.47, W.50, L.96, D.199, A.200, E.202, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.47, A:W.50, A:L.96, A:V.225 Hydrogen bonds: A:D.199, A:S.205, A:S.205, A:G.230 Water bridges: A:K.52, A:G.203, A:F.239 Salt bridges: A:H.43 pi-Stacking: A:W.50

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: R.233, K.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.236, A:K.236 Water bridges: A:G.235, A:G.238

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: K.174, T.177 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.174, A:T.177, H2O.238, H2O.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, K. et al., Fluorine in Pharmaceuticals: Looking Beyond Intuition. Science (2007)

Release Date

2008-06-24

Peptides

THROMBIN HEAVY CHAIN: A
HIRUDIN IIA: B
THROMBIN LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
L

THROMBIN HEAVY CHAIN

HIRUDIN IIA

THROMBIN LIGHT CHAIN

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