SMTL ID : 4ayy.1

Human thrombin - inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 9MX: (R)-1-[(S)-3-[((S)-1-Carbamimidoyl-piperidin-3-ylmethyl)-carbamoyl]-2-(naphthalene-2-sulfonylamino)-propionyl]-4-methyl-piperidine-2-carboxylic acid(Non-covalent)

9MX.1: 18 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, I.179, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:L.96, B:I.179, B:V.225, B:W.227 Hydrogen bonds: B:G.228, B:G.230, B:G.230 Water bridges: B:F.239, B:Y.240 Salt bridges: B:D.199

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain B: L.46, N.53 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.46 Hydrogen bonds: B:N.53

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.233, B:K.236 Water bridges: B:G.198, B:G.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilpert, K. et al., Design and Synthesis of Potent and Highly Selective Thrombin Inhibitors. J.Med.Chem. (1994)

Release Date

2012-08-15

Peptides

THROMBIN LIGHT CHAIN: A
THROMBIN HEAVY CHAIN: B
HIRUDIN-3A': C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

THROMBIN LIGHT CHAIN

THROMBIN HEAVY CHAIN

HIRUDIN-3A'

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