SMTL ID : 4az2.1

Human thrombin - inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 9MU: (R)-N-((S)-1-CARBAMIMIDOYL-PIPERIDIN-3-YLMETHYL)-2-(NAPHTHALENE-2-SULFONYLAMINO)-3-PHENYL-PROPIONAMIDE(Non-covalent)

9MU.1: 15 residues within 4Å: Chain B: H.43, Y.47, E.94, L.96, D.199, A.200, C.201, E.202, S.205, V.225, W.227, G.228, E.229, G.230, G.238 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.96, B:L.96, B:V.225, B:W.227 Hydrogen bonds: B:A.200, B:E.202, B:E.202, B:G.228, B:G.230, B:G.230 Water bridges: B:W.227, B:E.229, B:Y.240 Salt bridges: B:D.199

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain B: L.46, N.53 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.46 Hydrogen bonds: B:N.53, B:T.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilpert, K. et al., Design and Synthesis of Potent and Highly Selective Thrombin Inhibitors. J.Med.Chem. (1994)

Release Date

2012-08-15

Peptides

THROMBIN LIGHT CHAIN: A
THROMBIN HEAVY CHAIN: B
HIRUDIN-3A': C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

THROMBIN LIGHT CHAIN

THROMBIN HEAVY CHAIN

HIRUDIN-3A'

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