- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-oligomer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: T.176
- Ligands: ADP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:T.176, H2O.102, H2O.148, H2O.304, H2O.305
MG.5: 2 residues within 4Å:- Chain B: T.176
- Ligands: ADP.4
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:T.176, H2O.408, H2O.444, H2O.548, H2O.549
MG.9: 2 residues within 4Å:- Chain C: T.176
- Ligands: ADP.8
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:T.176, H2O.674, H2O.713, H2O.867, H2O.868
MG.12: 5 residues within 4Å:- Chain D: T.167, E.192, R.193
- Ligands: ADP.11, ALF.13
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:T.167, H2O.995, H2O.998, H2O.1028
MG.15: 3 residues within 4Å:- Chain E: T.167
- Ligands: ADP.14, SO4.16
5 PLIP interactions:1 interactions with chain E, 4 Ligand-Water interactions- Metal complexes: E:T.167, H2O.1268, H2O.1289, H2O.1360, H2O.1363
MG.18: 4 residues within 4Å:- Chain F: T.167, E.192
- Ligands: ADP.17, ALF.19
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:T.167, H2O.1493, H2O.1498, H2O.1528
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: Y.244, L.245, Y.248, R.304
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.244, A:R.304, A:R.304
- Water bridges: A:R.304
GOL.6: 5 residues within 4Å:- Chain B: V.129, G.130, Y.244, Y.248, R.304
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.244, B:R.304, B:R.304
- Water bridges: B:R.304
GOL.7: 8 residues within 4Å:- Chain B: Q.349, F.351, L.369
- Chain F: A.162, G.163, R.341, E.345, Y.349
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain F- Hydrogen bonds: B:Q.349, F:R.341, F:E.345
- Water bridges: F:Y.349
GOL.10: 7 residues within 4Å:- Chain C: M.62, V.129, G.130, Y.244, L.245, Y.248, R.304
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Y.244, C:R.304
- Water bridges: C:E.50, C:R.304
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
ALF.13: 11 residues within 4Å:- Chain C: S.344, R.373
- Chain D: G.161, A.162, G.163, K.166, E.192, R.193, Y.315
- Ligands: ADP.11, MG.12
No protein-ligand interaction detected (PLIP)ALF.19: 11 residues within 4Å:- Chain B: S.344, R.373
- Chain F: A.162, G.163, K.166, T.167, E.192, R.193, Y.315
- Ligands: ADP.17, MG.18
No protein-ligand interaction detected (PLIP)- 1 x SO4: SULFATE ION(Non-functional Binders)
SO4.16: 9 residues within 4Å:- Chain A: R.373
- Chain E: A.162, K.166, R.193, N.261, R.264, Y.315
- Ligands: ADP.14, MG.15
13 PLIP interactions:7 interactions with chain E, 6 interactions with chain A- Hydrogen bonds: E:N.261, E:R.264
- Water bridges: E:R.193, E:R.193, E:R.264, A:R.373, A:R.373, A:R.373, A:R.373, A:R.373
- Salt bridges: E:K.166, E:R.193, A:R.373
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Menz, R.I. et al., Structure of Bovine Mitochondrial F1-ATPase with Nucleotide Bound to All Three Catalytic Sites: Implications for the Mechanism of Rotary Catalysis. Cell(Cambridge,Mass.) (2001)
- Release Date
- 2001-08-10
- Peptides
- BOVINE MITOCHONDRIAL F1-ATPASE: ABC
BOVINE MITOCHONDRIAL F1-ATPASE: DEF
BOVINE MITOCHONDRIAL F1-ATPASE: G
BOVINE MITOCHONDRIAL F1-ATPASE: H
BOVINE MITOCHONDRIAL F1-ATPASE: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
I
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-oligomer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Menz, R.I. et al., Structure of Bovine Mitochondrial F1-ATPase with Nucleotide Bound to All Three Catalytic Sites: Implications for the Mechanism of Rotary Catalysis. Cell(Cambridge,Mass.) (2001)
- Release Date
- 2001-08-10
- Peptides
- BOVINE MITOCHONDRIAL F1-ATPASE: ABC
BOVINE MITOCHONDRIAL F1-ATPASE: DEF
BOVINE MITOCHONDRIAL F1-ATPASE: G
BOVINE MITOCHONDRIAL F1-ATPASE: H
BOVINE MITOCHONDRIAL F1-ATPASE: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
I