SMTL ID : 1pov.2 (3 other biounits)

ROLE AND MECHANISM OF THE MATURATION CLEAVAGE OF VP0 IN POLIOVIRUS ASSEMBLY: STRUCTURE OF THE EMPTY CAPSID ASSEMBLY INTERMEDIATE AT 2.9 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-5-5-5-mer

Ligands

5 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 10 residues within 4Å: Chain A: G.1, A.2, Y.31 Chain D: V.4, T.27, I.29, Y.31 Chain L: L.2 Ligands: MYR.3, MYR.9 4 PLIP interactions: 1 interactions with chain L, 2 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: L:L.2, D:I.29, A:Y.31 Hydrogen bonds: D:T.27 MYR.3: 10 residues within 4Å: Chain D: G.1, A.2, Y.31 Chain G: V.4, T.27, I.29, Y.31 Chain O: L.2 Ligands: MYR.1, MYR.5 3 PLIP interactions: 1 interactions with chain O, 1 interactions with chain D, 1 interactions with chain G Hydrophobic interactions: O:L.2, D:Y.31, G:I.29 MYR.5: 10 residues within 4Å: Chain C: L.2 Chain G: G.1, A.2, Y.31 Chain J: V.4, T.27, I.29, Y.31 Ligands: MYR.3, MYR.7 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain G, 1 interactions with chain J Hydrophobic interactions: C:L.2, G:Y.31, J:I.29 MYR.7: 10 residues within 4Å: Chain F: L.2 Chain J: G.1, A.2, Y.31 Chain M: V.4, T.27, I.29, Y.31 Ligands: MYR.5, MYR.9 4 PLIP interactions: 1 interactions with chain F, 2 interactions with chain M, 1 interactions with chain J Hydrophobic interactions: F:L.2, M:I.29, J:Y.31 Hydrogen bonds: M:T.27 MYR.9: 10 residues within 4Å: Chain A: V.4, T.27, I.29, Y.31 Chain I: L.2 Chain M: G.1, A.2, Y.31 Ligands: MYR.1, MYR.7 4 PLIP interactions: 1 interactions with chain M, 2 interactions with chain A, 1 interactions with chain I Hydrophobic interactions: M:Y.31, A:I.29, I:L.2 Hydrogen bonds: A:T.27

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 13 residues within 4Å: Chain B: Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.112, B:L.134, B:Y.159, B:Y.159, B:Y.159, B:I.183, B:I.194, B:V.196, B:V.196, B:V.199, B:Y.205, B:F.237, B:F.237, B:F.237, B:F.237 Hydrogen bonds: B:S.206, B:S.206 SPH.4: 13 residues within 4Å: Chain E: Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 17 PLIP interactions: 17 interactions with chain E Hydrophobic interactions: E:Y.112, E:L.134, E:Y.159, E:Y.159, E:Y.159, E:I.183, E:I.194, E:V.196, E:V.196, E:V.199, E:Y.205, E:F.237, E:F.237, E:F.237, E:F.237 Hydrogen bonds: E:S.206, E:S.206 SPH.6: 13 residues within 4Å: Chain H: Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 17 PLIP interactions: 17 interactions with chain H Hydrophobic interactions: H:Y.112, H:L.134, H:Y.159, H:Y.159, H:Y.159, H:I.183, H:I.194, H:V.196, H:V.196, H:V.199, H:Y.205, H:F.237, H:F.237, H:F.237, H:F.237 Hydrogen bonds: H:S.206, H:S.206 SPH.8: 13 residues within 4Å: Chain K: Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 17 PLIP interactions: 17 interactions with chain K Hydrophobic interactions: K:Y.112, K:L.134, K:Y.159, K:Y.159, K:Y.159, K:I.183, K:I.194, K:V.196, K:V.196, K:V.199, K:Y.205, K:F.237, K:F.237, K:F.237, K:F.237 Hydrogen bonds: K:S.206, K:S.206 SPH.10: 13 residues within 4Å: Chain N: Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 17 PLIP interactions: 17 interactions with chain N Hydrophobic interactions: N:Y.112, N:L.134, N:Y.159, N:Y.159, N:Y.159, N:I.183, N:I.194, N:V.196, N:V.196, N:V.199, N:Y.205, N:F.237, N:F.237, N:F.237, N:F.237 Hydrogen bonds: N:S.206, N:S.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basavappa, R. et al., Role and mechanism of the maturation cleavage of VP0 in poliovirus assembly: structure of the empty capsid assembly intermediate at 2.9 A resolution. Protein Sci. (1994)

Release Date

1995-12-07

Peptides

POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1): ADGJM
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1): BEHKN
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1): CFILO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

D
0

G
0

J
0

M
0

B
1

E
1

H
1

K
1

N
1

C
3

F
3

I
3

L
3

O
3

POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1)

POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1)

POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1)

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