SMTL ID : 1pyh.1

Crystal structure of RC-LH1 core complex from Rhodopseudomonas palustris

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.80 Å

Oligo State

hetero-1-1-1-16-15-mer

Ligands

34 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)(Non-functional Binders)

BCL.1: 7 residues within 4Å: Chain A: X.174, X.177, X.178, X.181 Ligands: BCL.2, BPH.3, BCL.5 0 PLIP interactions: BCL.2: 16 residues within 4Å: Chain A: X.124, X.125, X.127, X.128, X.157, X.158, X.160, X.167, X.168, X.176, X.244, X.245 Ligands: BCL.1, BCL.5, BCL.6, BPH.7 0 PLIP interactions: BCL.5: 14 residues within 4Å: Chain B: X.153, X.157, X.186, X.187, X.189, X.190, X.205, X.206, X.209, X.280 Ligands: BCL.1, BCL.2, BPH.3, BCL.6 0 PLIP interactions: BCL.6: 9 residues within 4Å: Chain A: X.150 Chain B: X.203, X.206, X.207, X.210, X.211 Ligands: BCL.2, BCL.5, BPH.7 0 PLIP interactions: BCL.8: 6 residues within 4Å: Chain D: X.16, X.19 Chain E: X.21, X.28 Ligands: BCL.9, BCL.11 0 PLIP interactions: BCL.9: 8 residues within 4Å: Chain E: X.17, X.20, X.21, X.24, X.25, X.28 Ligands: BCL.8, BCL.36 0 PLIP interactions: BCL.10: 5 residues within 4Å: Chain F: X.12, X.16 Chain G: X.28 Ligands: BCL.11, BCL.13 0 PLIP interactions: BCL.11: 3 residues within 4Å: Chain G: X.24 Ligands: BCL.8, BCL.10 0 PLIP interactions: BCL.12: 6 residues within 4Å: Chain H: X.12, X.16, X.19 Chain I: X.17, X.21 Ligands: BCL.13 0 PLIP interactions: BCL.13: 7 residues within 4Å: Chain I: X.17, X.20, X.21, X.24, X.25 Ligands: BCL.10, BCL.12 0 PLIP interactions: BCL.14: 6 residues within 4Å: Chain J: X.12, X.16, X.19 Chain K: X.28 Ligands: BCL.15, BCL.17 0 PLIP interactions: BCL.15: 6 residues within 4Å: Chain K: X.20, X.21, X.24, X.25, X.28 Ligands: BCL.14 0 PLIP interactions: BCL.16: 6 residues within 4Å: Chain L: X.12, X.16 Chain M: X.21, X.28 Ligands: BCL.17, BCL.18 0 PLIP interactions: BCL.17: 6 residues within 4Å: Chain M: X.21, X.24, X.25, X.28 Ligands: BCL.14, BCL.16 0 PLIP interactions: BCL.18: 7 residues within 4Å: Chain N: X.9, X.13, X.16 Chain O: X.24, X.28 Ligands: BCL.16, BCL.19 0 PLIP interactions: BCL.19: 6 residues within 4Å: Chain N: X.16, X.19 Chain O: X.21, X.28 Ligands: BCL.18, BCL.20 0 PLIP interactions: BCL.20: 8 residues within 4Å: Chain P: X.12, X.13, X.16 Chain Q: X.17, X.21, X.24 Ligands: BCL.19, BCL.21 0 PLIP interactions: BCL.21: 7 residues within 4Å: Chain P: X.16, X.19, X.20, X.23 Chain Q: X.28 Ligands: BCL.20, BCL.23 0 PLIP interactions: BCL.22: 6 residues within 4Å: Chain R: X.16, X.19, X.20, X.23 Ligands: BCL.23, BCL.25 0 PLIP interactions: BCL.23: 7 residues within 4Å: Chain R: X.12, X.16 Chain S: X.17, X.21, X.24 Ligands: BCL.21, BCL.22 0 PLIP interactions: BCL.24: 4 residues within 4Å: Chain T: X.19, X.23 Ligands: BCL.25, BCL.26 0 PLIP interactions: BCL.25: 2 residues within 4Å: Ligands: BCL.22, BCL.24 0 PLIP interactions: BCL.26: 7 residues within 4Å: Chain T: X.19, X.22, X.23 Chain V: X.16 Chain W: X.17, X.24 Ligands: BCL.24 0 PLIP interactions: BCL.27: 3 residues within 4Å: Chain W: X.14, X.17, X.18 0 PLIP interactions: BCL.28: 5 residues within 4Å: Chain Y: X.17, X.20, X.21, X.24 Ligands: BCL.29 0 PLIP interactions: BCL.29: 3 residues within 4Å: Chain Y: X.21, X.28 Ligands: BCL.28 0 PLIP interactions: BCL.30: 6 residues within 4Å: Chain 0: X.12, X.16 Chain 1: X.17, X.28 Ligands: BCL.31, BCL.32 0 PLIP interactions: BCL.31: 2 residues within 4Å: Chain 1: X.24 Ligands: BCL.30 0 PLIP interactions: BCL.32: 2 residues within 4Å: Ligands: BCL.30, BCL.33 0 PLIP interactions: BCL.33: 5 residues within 4Å: Chain 2: X.12, X.16, X.19 Ligands: BCL.32, BCL.35 0 PLIP interactions: BCL.34: 5 residues within 4Å: Chain 4: X.12, X.15, X.16, X.19 Chain 5: X.21 0 PLIP interactions: BCL.35: 2 residues within 4Å: Chain 5: X.24 Ligands: BCL.33 0 PLIP interactions: BCL.36: 6 residues within 4Å: Chain 6: X.12, X.16, X.19, X.20 Chain 7: X.21 Ligands: BCL.9 0 PLIP interactions: BCL.37: 3 residues within 4Å: Chain 7: X.20, X.21, X.24 0 PLIP interactions:

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.3: 14 residues within 4Å: Chain A: X.181, X.184 Chain B: X.59, X.63, X.67, X.125, X.126, X.129, X.149, X.150, X.153, X.273 Ligands: BCL.1, BCL.5 No protein-ligand interaction detected (PLIP) BPH.7: 16 residues within 4Å: Chain A: X.41, X.42, X.93, X.96, X.100, X.117, X.120, X.121, X.123, X.124, X.149 Chain B: X.210, X.213, X.214 Ligands: BCL.2, BCL.6 No protein-ligand interaction detected (PLIP)

1 x FE: FE (III) ION(Non-functional Binders)

FE.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roszak, A.W. et al., Crystal structure of the RC-LH1 core complex from Rhodopseudomonas palustris. Science (2003)

Release Date

2004-03-02

Peptides

Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C
Light-harvesting protein B-800/850, alpha chain: DFHJLNPRTVXZ0246
Light-harvesting protein B-800/850, beta chain: EGIKMOQSUWY1357

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

F
F

H
H

J
J

L
L

N
N

P
P

R
R

T
T

V
V

X
X

Z
Z

0
1

2
3

4
5

6
7

E
E

G
G

I
I

K
K

M
M

O
O

Q
Q

S
S

U
U

W
W

Y
Y

1
2

3
4

5
6

7
8

Reaction center protein L chain

Reaction center protein M chain

Reaction center protein H chain

Light-harvesting protein B-800/850, alpha chain

Light-harvesting protein B-800/850, beta chain

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