SMTL ID : 2a7a.1

On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1, H2O.1 MN.8: 4 residues within 4Å: Chain B: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.5, H2O.6 MN.15: 4 residues within 4Å: Chain C: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.8, C:D.10, C:D.19, C:H.24, H2O.10, H2O.11 MN.22: 4 residues within 4Å: Chain D: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.8, D:D.10, D:D.19, D:H.24, H2O.14, H2O.15

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.1 CA.9: 4 residues within 4Å: Chain B: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.5, H2O.6 CA.16: 4 residues within 4Å: Chain C: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.10, C:Y.12, C:D.19, H2O.10, H2O.10 CA.23: 4 residues within 4Å: Chain D: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.10, D:Y.12, D:D.19, H2O.14, H2O.15

20 x XE: XENON(Non-covalent)

XE.3: 4 residues within 4Å: Chain A: V.5, L.61, F.212, I.214 Ligand excluded by PLIP XE.4: 7 residues within 4Å: Chain A: H.51, I.53, S.62, A.63, V.64 Chain C: V.57, V.188 Ligand excluded by PLIP XE.5: 2 residues within 4Å: Chain A: I.181 Ligands: XE.7 Ligand excluded by PLIP XE.6: 5 residues within 4Å: Chain A: F.111, I.181, F.191, I.214 Ligands: XE.7 Ligand excluded by PLIP XE.7: 6 residues within 4Å: Chain A: L.81, I.181, F.191, I.214 Ligands: XE.5, XE.6 Ligand excluded by PLIP XE.10: 4 residues within 4Å: Chain B: V.5, L.61, F.212, I.214 Ligand excluded by PLIP XE.11: 7 residues within 4Å: Chain B: H.51, I.53, S.62, A.63, V.64 Chain D: V.57, V.188 Ligand excluded by PLIP XE.12: 2 residues within 4Å: Chain B: I.181 Ligands: XE.14 Ligand excluded by PLIP XE.13: 5 residues within 4Å: Chain B: F.111, I.181, F.191, I.214 Ligands: XE.14 Ligand excluded by PLIP XE.14: 6 residues within 4Å: Chain B: L.81, I.181, F.191, I.214 Ligands: XE.12, XE.13 Ligand excluded by PLIP XE.17: 4 residues within 4Å: Chain C: V.5, L.61, F.212, I.214 Ligand excluded by PLIP XE.18: 7 residues within 4Å: Chain A: V.57, V.188 Chain C: H.51, I.53, S.62, A.63, V.64 Ligand excluded by PLIP XE.19: 2 residues within 4Å: Chain C: I.181 Ligands: XE.21 Ligand excluded by PLIP XE.20: 5 residues within 4Å: Chain C: F.111, I.181, F.191, I.214 Ligands: XE.21 Ligand excluded by PLIP XE.21: 6 residues within 4Å: Chain C: L.81, I.181, F.191, I.214 Ligands: XE.19, XE.20 Ligand excluded by PLIP XE.24: 4 residues within 4Å: Chain D: V.5, L.61, F.212, I.214 Ligand excluded by PLIP XE.25: 7 residues within 4Å: Chain B: V.57, V.188 Chain D: H.51, I.53, S.62, A.63, V.64 Ligand excluded by PLIP XE.26: 2 residues within 4Å: Chain D: I.181 Ligands: XE.28 Ligand excluded by PLIP XE.27: 5 residues within 4Å: Chain D: F.111, I.181, F.191, I.214 Ligands: XE.28 Ligand excluded by PLIP XE.28: 6 residues within 4Å: Chain D: L.81, I.181, F.191, I.214 Ligands: XE.26, XE.27 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller-Dieckmann, C. et al., On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-07-19

Peptides

Concanavalin A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Concanavalin A

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