SMTL ID : 2pwr.1

HIV-1 protease in complex with a carbamoyl decorated pyrrolidine-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: W.42, P.44, K.55 Ligand excluded by PLIP

1 x G4G: 4,4'-{(3S,4S)-PYRROLIDINE-3,4-DIYLBIS[(BENZYLIMINO)SULFONYL]}DIBENZAMIDE(Non-covalent)

G4G.4: 27 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, I.84 31 PLIP interactions: 16 interactions with chain B, 15 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:V.32, B:P.81, B:I.84, A:L.23, A:A.28, A:V.32, A:I.50, A:V.82, A:I.84 Hydrogen bonds: B:D.29, B:D.30, B:D.30, B:D.30, B:I.50, A:D.25, A:D.29, A:D.29, A:D.29, A:D.30, A:I.50 Water bridges: B:R.8, B:R.8, B:D.29, B:G.48, B:G.48, A:R.8, A:K.45 Salt bridges: B:D.25, A:D.25

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain B: T.12, I.13, K.14, E.65, I.66, C.67, G.68 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.12, B:K.14, B:E.65, B:E.65, B:G.68 Water bridges: B:T.12, B:E.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blum, A. et al., Structure-Guided Design of C2-Symmetric HIV-1 Protease Inhibitors Based on a Pyrrolidine Scaffold. J.Med.Chem. (2008)

Release Date

2008-04-15

Peptides

Gag-Pol polyprotein (Pr160Gag-Pol): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein (Pr160Gag-Pol)

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