SMTL ID : 4i8z.1

Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor, GRL008

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

1 x G08: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL [(2S,3R)-4-{[(4-CARBAMOYLPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}-3-HYDROXY-1-PHENYLBUTAN-2-YL]CARBAMATE(Non-covalent)

G08.1: 26 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, V.82, I.84 21 PLIP interactions: 10 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:L.23, B:V.82, B:I.84, A:L.23, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:G.27, B:G.27, B:D.29, B:D.30, A:D.29, A:D.30, A:D.30, A:I.50 Water bridges: B:I.50, B:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yedidi, R.S. et al., P2' benzene carboxylic acid moiety is associated with decrease in cellular uptake: evaluation of novel non-peptidic HIV-1 protease inhibitors containing P2 bis-tetrahydrofuran moiety. Antimicrob.Agents Chemother. (2013)

Release Date

2013-07-24

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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