SMTL ID : 3gga.1 (2 other biounits)

HIV Protease inhibitors with pseudo-symmetric cores

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x GGW: methyl [(1S,4S,5S,7S,10S)-4-benzyl-1,10-di-tert-butyl-5-hydroxy-2,9,12-trioxo-7-(4-pyridin-2-ylbenzyl)-13-oxa-3,8,11-triazatetradec-1-yl]carbamate(Non-covalent)

GGW.1: 23 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, I.47, G.48, G.49, I.50, P.81, V.82 Chain B: R.8, D.25, G.27, A.28, D.29, I.47, G.48, G.49, I.50, P.81, V.82, I.84 18 PLIP interactions: 8 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:A.28, A:I.47, A:I.50, A:P.81, A:V.82, B:I.47, B:I.50, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:D.29, A:G.48, B:D.25, B:G.27, B:D.29, B:G.48 Water bridges: B:I.50, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Degoey, D.A. et al., 2-Pyridyl P1'-substituted symmetry-based human immunodeficiency virus protease inhibitors (A-792611 and A-790742) with potential for convenient dosing and reduced side effects. J.Med.Chem. (2009)

Release Date

2009-05-26

Peptides

V-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

V-1 protease

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