SMTL ID : 2zga.1

HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (hexagonal space group)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x YDP: (3S,4S),-3,4-BIS-[(4-CARBAMOYL-BENZENSULFONYL)-(3-METHYL-BUT-2-ENYL)-AMINO]-PYRROLIDINE(Non-covalent)

YDP.1: 15 residues within 4Å: Chain A: R.8, L.23, D.25, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, I.47, G.48, G.49, I.50 Ligands: YDP.2 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.23, A:P.81, A:V.82, B:A.28, B:I.47 Hydrogen bonds: A:R.8, B:D.25, B:I.50 Water bridges: B:D.29 YDP.2: 15 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, I.47, G.48, G.49, I.50 Chain B: R.8, L.23, D.25, P.81, V.82, I.84 Ligands: YDP.1 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.23, B:P.81, B:V.82, A:A.28, A:I.47 Hydrogen bonds: B:R.8, A:D.25, A:I.50 Water bridges: A:D.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blum, A. et al., Two Solutions for the Same Problem: Multiple Binding Modes of Pyrrolidine-Based HIV-1 Protease Inhibitors. J.Mol.Biol. (2011)

Release Date

2009-02-03

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protease

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