SMTL ID : 3ckt.1

HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (orthorombic space group)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

1 x YDP: (3S,4S),-3,4-BIS-[(4-CARBAMOYL-BENZENSULFONYL)-(3-METHYL-BUT-2-ENYL)-AMINO]-PYRROLIDINE(Non-covalent)

YDP.3: 22 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, I.84 20 PLIP interactions: 8 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, A:L.23, A:A.28, A:V.32, A:I.47, A:I.84 Hydrogen bonds: B:D.30, B:D.30, B:D.30, A:D.25, A:D.29, A:D.30, A:D.30, A:I.50 Water bridges: B:D.29, B:D.29, A:G.48 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blum, A. et al., Two Solutions for the Same Problem: Multiple Binding Modes of Pyrrolidine-Based HIV-1 Protease Inhibitors. J.Mol.Biol. (2011)

Release Date

2009-03-24

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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