SMTL ID : 6cym.1 (1 other biounit)

Reversible Covalent Direct Thrombin Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 71F: 2-methoxybenzoic acid(Covalent)

71F.1: 6 residues within 4Å: Chain A: A.200, E.202, S.205, V.225, G.228, G.230 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.200, A:V.225

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: L.46, N.53 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.46

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: Y.190, R.233, K.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.236 Water bridges: A:Y.190, A:G.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaraja, M. et al., Reversible covalent direct thrombin inhibitors. PLoS ONE (2018)

Release Date

2018-05-09

Peptides

Prothrombin: A
Prothrombin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prothrombin

Prothrombin

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