SMTL ID : 3asl.1

Structure of UHRF1 in complex with histone tail

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.5, C.8, C.16, C.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:C.16, A:C.19 ZN.2: 4 residues within 4Å: Chain A: C.21, C.24, H.44, C.47 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:H.44, A:C.47 ZN.3: 4 residues within 4Å: Chain A: C.36, C.39, C.63, C.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.36, A:C.39, A:C.63, A:C.66 ZN.4: 2 residues within 4Å: Chain A: H.22, E.65 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.22, A:E.65, A:E.65

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: H.7, C.8, K.9, R.14 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: L.15 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.15 EDO.7: 5 residues within 4Å: Chain A: G.26, R.27, Q.28, H.44, Y.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.28, A:Q.28, A:Y.46, A:Y.46 EDO.8: 4 residues within 4Å: Chain A: V.55 Chain B: A.1, T.3, T.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.3 Water bridges: B:T.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arita, K. et al., Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-01-25

Peptides

E3 ubiquitin-protein ligase UHRF1: A
Histone H3.3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UHRF1

Histone H3.3

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