- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x H1M- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]methyl 2-deoxy-2-(2-hydroxyethyl)-alpha-D-mannopyranoside
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 4 residues within 4Å:- Chain A: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1, H2O.2
MN.6: 4 residues within 4Å:- Chain B: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.6, H2O.6
MN.11: 4 residues within 4Å:- Chain C: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.8, C:D.10, C:D.19, C:H.24, H2O.12, H2O.13
MN.14: 4 residues within 4Å:- Chain D: E.8, D.10, D.19, H.24
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.8, D:D.10, D:D.19, D:H.24, H2O.18, H2O.19
- 4 x CA: CALCIUM ION(Non-covalent)
CA.4: 4 residues within 4Å:- Chain A: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.2
CA.7: 4 residues within 4Å:- Chain B: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.6, H2O.8
CA.12: 4 residues within 4Å:- Chain C: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.10, C:Y.12, C:D.19, H2O.12, H2O.14
CA.15: 4 residues within 4Å:- Chain D: D.10, Y.12, N.14, D.19
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.10, D:D.10, D:Y.12, D:D.19, H2O.18
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: S.113, N.124, A.125, V.179, H.180
- Chain B: F.130, Q.137, D.139
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.113, A:S.113, A:H.180, B:Q.137, B:D.139
- Water bridges: A:N.124
GOL.8: 8 residues within 4Å:- Chain A: F.130, D.139
- Chain B: S.113, K.114, L.115, N.124, V.179, H.180
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.180
- Water bridges: B:K.114, B:H.180, A:Q.137
GOL.13: 8 residues within 4Å:- Chain C: S.113, L.115, N.124, V.179, H.180
- Chain D: F.130, Q.137, D.139
7 PLIP interactions:3 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:Q.137, D:D.139, D:D.139, C:S.113, C:S.113, C:H.180
- Water bridges: C:N.124
GOL.16: 9 residues within 4Å:- Chain C: F.130, Q.137, D.139
- Chain D: S.113, N.124, A.125, L.126, V.179, H.180
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:Q.137, C:D.139, D:N.124, D:H.180
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kadirvelraj, R. et al., Involvement of water in carbohydrate-protein binding: concanavalin A revisited. J.Am.Chem.Soc. (2008)
- Release Date
- 2009-03-03
- Peptides
- Concanavalin-A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C
SMTL ID : 3d4k.1
Concanavalin A Complexed to a Synthetic Analog of the Trimannoside
Concanavalin-A
Toggle Identical (ABCD)Related Entries With Identical Sequence
1apn.1 | 1bxh.1 | 1c57.1 | 1ces.1 | 1cjp.1 | 1con.1 | 1cvn.1 | 1dq0.1 | 1dq1.1 | 1dq2.1 | 1dq4.1 | 1dq5.1 | 1dq6.1 | 1enq.1 | 1enr.1 | 1ens.1 | 1gic.1 | 1gkb.1 | 1hqw.1 | 1i3h.1 | 1jbc.1 | 1jn2.1 | 1jn2.2 | 1joj.1 | 1joj.2 | 1jui.1 | 1jui.2 | 1jw6.1 | 1jw6.2 | 1jyc.1 more...less...1jyc.2 | 1jyi.1 | 1jyi.2 | 1nls.1 | 1nxd.1 | 1nxd.2 | 1nxd.3 | 1nxd.4 | 1nxd.5 | 1nxd.6 | 1nxd.7 | 1nxd.8 | 1ona.1 | 1qdc.1 | 1qdo.1 | 1qgl.1 | 1qny.1 | 1scr.1 | 1scs.1 | 1tei.1 | 1tei.2 | 1tei.3 | 1val.1 | 1vam.1 | 1vln.1 | 1vln.2 | 1xqn.1 | 2a7a.1 | 2ctv.1 | 2enr.1 | 2g4i.1 | 2uu8.1 | 2yz4.1 | 3enr.1 | 3nwk.1 | 3nwk.2 | 3nwk.3 | 3nwk.4 | 3qlq.1 | 4czs.1 | 4p9w.1 | 4p9x.1 | 4p9y.1 | 4pf5.1 | 5cna.1 | 5o6n.1 | 5wey.1 | 5ygm.1 | 5z5l.1 | 5z5l.2 | 5z5n.1 | 5z5p.1 | 5z5y.1 | 5z5y.2 | 5zac.1 | 6ahg.1 | 6gw9.1 | 6h2m.1 | 7mg1.1 | 7mg2.1 | 7mg3.1 | 7mg4.1 | 7mg5.1 | 7mg6.1 | 7mg7.1 | 7mg8.1 | 7mg9.1 | 7mga.1 | 7mgb.1 | 7mgc.1 | 7mgd.1 | 8wmg.1 | 8wmk.1 | 9b33.1 | 9b34.1 | 9b36.1 | 9b37.1