SMTL ID : 3g72.3 (2 other biounits)

Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 9 residues within 4Å: Chain A: T.18, Q.19, Y.20, V.36, T.227, G.228, A.229, S.230 Ligands: A6T.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.20 DMS.4: 9 residues within 4Å: Chain B: T.18, Q.19, Y.20, V.36, T.227, G.228, A.229, S.230 Ligands: A6T.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.20

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.75, T.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.77, A:T.77 Water bridges: A:N.75 NAG.5: 4 residues within 4Å: Chain B: N.75, L.92, M.107, V.140 No protein-ligand interaction detected (PLIP)

2 x A6T: (1S,5R)-7-{4-[3-(2-chloro-3,6-difluorophenoxy)propyl]phenyl}-N-cyclopropyl-N-(2,3-dichlorobenzyl)-3,9-diazabicyclo[3.3.1]non-6-ene-6-carboxamide(Non-covalent)

A6T.3: 28 residues within 4Å: Chain A: Q.19, V.36, D.38, G.40, S.41, W.45, V.46, P.47, A.57, H.61, L.81, Y.83, V.88, V.111, M.114, P.118, F.119, L.121, A.122, F.124, D.125, G.126, V.127, D.226, G.228, A.229, S.230 Ligands: DMS.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.36, A:W.45, A:L.81, A:Y.83, A:V.88, A:F.119, A:A.122, A:F.124, A:F.124, A:V.127 Hydrogen bonds: A:D.226 pi-Stacking: A:H.61, A:F.119, A:F.124 Halogen bonds: A:A.57 A6T.6: 24 residues within 4Å: Chain B: Q.19, V.36, D.38, G.40, S.41, W.45, P.47, A.57, H.61, L.81, Y.83, V.111, M.114, P.118, F.119, A.122, F.124, D.125, V.127, D.226, G.228, A.229, S.230 Ligands: DMS.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.36, B:W.45, B:L.81, B:Y.83, B:F.119, B:A.122, B:F.124 Hydrogen bonds: B:Y.83, B:D.226 Water bridges: B:D.226 pi-Stacking: B:H.61, B:F.119 Halogen bonds: B:A.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezencon, O. et al., Design and Preparation of Potent, Nonpeptidic, Bioavailable Renin Inhibitors. J.Med.Chem. (2009)

Release Date

2009-06-30

Peptides

Renin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Renin

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