SMTL ID : 4xx4.3 (4 other biounits)

Renin in complex with (4S)-4-isopropyl-4-methyl-6-oxo-1-(3-(2-oxo-4-phenylpyrrolidin-1-yl)benzyl)tetrahydropyrimidin-2(1H)-iminium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: H.74, N.75, T.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.75 NAG.4: 3 residues within 4Å: Chain C: H.74, N.75, T.77 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.75 NAG.7: 3 residues within 4Å: Chain E: H.74, N.75, T.77 1 PLIP interactions: 1 interactions with chain E Water bridges: E:N.75

6 x 70Y: (2Z,6S)-2-imino-6-methyl-3-{3-[(4R)-2-oxo-4-phenylpyrrolidin-1-yl]benzyl}-6-(propan-2-yl)tetrahydropyrimidin-4(1H)-one(Non-covalent)

70Y.2: 14 residues within 4Å: Chain A: Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, D.226, G.228, A.229, S.230, M.303 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.83, A:Y.83, A:P.118, A:P.118, A:A.122, A:A.229 Hydrogen bonds: A:S.84, A:T.85, A:S.230 Salt bridges: A:D.38, A:D.226 pi-Stacking: A:F.124 70Y.3: 15 residues within 4Å: Chain B: Q.19, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, M.303 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.36, B:Y.83, B:Y.83, B:T.85, B:P.118, B:P.118, B:A.122, B:F.124, B:A.229 Hydrogen bonds: B:G.40, B:S.84, B:T.85 Salt bridges: B:D.38, B:D.226 70Y.5: 14 residues within 4Å: Chain C: Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, D.226, G.228, A.229, S.230, M.303 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.83, C:Y.83, C:P.118, C:P.118, C:A.122, C:A.229 Hydrogen bonds: C:S.84, C:T.85, C:S.230 Salt bridges: C:D.38, C:D.226 pi-Stacking: C:F.124 70Y.6: 15 residues within 4Å: Chain D: Q.19, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, M.303 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:V.36, D:Y.83, D:Y.83, D:T.85, D:P.118, D:P.118, D:A.122, D:F.124, D:A.229 Hydrogen bonds: D:G.40, D:S.84, D:T.85 Salt bridges: D:D.38, D:D.226 70Y.8: 14 residues within 4Å: Chain E: Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, D.226, G.228, A.229, S.230, M.303 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:Y.83, E:Y.83, E:P.118, E:P.118, E:A.122, E:A.229 Hydrogen bonds: E:S.84, E:T.85, E:S.230 Salt bridges: E:D.38, E:D.226 pi-Stacking: E:F.124 70Y.9: 15 residues within 4Å: Chain F: Q.19, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, M.303 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:V.36, F:Y.83, F:Y.83, F:T.85, F:P.118, F:P.118, F:A.122, F:F.124, F:A.229 Hydrogen bonds: F:G.40, F:S.84, F:T.85 Salt bridges: F:D.38, F:D.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKittrick, B.A. et al., Iminopyrimidinones: a novel pharmacophore for the development of orally active renin inhibitors. Bioorg. Med. Chem. Lett. (2015)

Release Date

2015-02-18

Peptides

Renin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Renin

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